LOC110522477 (mgat2)


Basic Information

Item Value
gene id LOC110522477
gene name mgat2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30816416 ~ 30823059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600906.2
CTGAGGACACGACAGTAacaggcctgattaccaacaacgacgaggagGTAGGACCTCTGACGgtgtggtgccaggtaaacaacctcaCCCTCAACATCAGAAAAagaaaggagctgattgtggacttccagaggaaccaggctgggcaCGACCCCATTCTTTCCATGTTCCTCGGAGTACACATCTCCAAGGAGATAAAATGGTCAAACCACATGGACACCGTGGTGAATAAGTAATGAcagcgactcttcaacctcaggatgctgaagaaatgCAGCTTGTCCCCGAGGGCCCTCGCACtattctacaggagcaccatcgagagcattctgccGAGCTACATCACAGCCTGGTACTCCACCGCCGCAGAACGTAATGCGTGTATGCTAAACTGTAACACTGGCCTATAGCTTCTACCCCAAGACCATCAacctgctgaatagccaccaatAGTCAGTGGGTTCCATGCACAACTCTACACTGCAGCCTCTGAGACCAACATGCCTTATGGGAATCTCACATGGCATCACTTATATTCCACAAAGACACATGTCTACATTCTAAAAATGTGTGCTAGCAACAAGTGTTAGCAACCAACAGAATTGTAAACTGTTTTCTATcaggactccctgcctgcctcctttCCTGCCTGCCTCTCCCAAGCACAGCAGTGCCATTAGAAATTGCAAACCTGCCTTTTTTCAGTTTCTCTACAATCAACTCCTCTCCTTCCCAAGGGGGGTGACTGCCTGTCATGAGATTCCGAGTCTACAAGAGGAAGGTACAATACACGACGAGTCCCAAGTCATGTGTGGTGATACTGacgctggtggtggtggtgtgtggccTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGGGTGGTGGTCCTGAAAGAGGCTGAGGGGGCGAGGAGAAGCAGCAGTAGCCAGGTGCAGCCACAGCCGCAGGCCACACCTGCAGTCAGCCGGATACCTAACCTACCACCCATCGCACCTGTCAACGAGACACACCAGAAGAACCAGCCTGAAAAGCACCTGGAGAAAGAGGAGGTGGTAAAACCAGAGGTGGACAACACCACCCAGGTCTACCGTGGCATTGTGTTCCAGCTCAACTTTGACCAGACAGTGAGACATGAGGAGCAGTTCAGGGCAGCGAGGAAGAAGGATGATCTGGTGGTGGTGGTCCAGGTGCACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGAAAGGCCAGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCACGACTTCTGGTCCCCCGAGATCAACCAGGTGGTGGCCTCAGTGGACTTCTGCCAGGTTCTCCAGATCTTCTTTCCCTTCAGCATCCAACTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGCCCCAGAGACATTTCCAAGATAGACGCCTTAAAGCTGGGCTGCATCAACGCAGAGTACCCCGACTCGTTTGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCCCTGAAGGACCACCGGGGTCTGGTGCTTCTCATCGAGGAGGACCACTTCCTCTCCCCTGACTTCCTCCACTTCCTCAAGCTGATGTCCATCCTGAAGAGGGAGAATTGCCCTGACTGTGACATCCTATCTCTGGGGAGCTACGGCCACATCAGCTACCCCAGTAAAGCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAACTCATTCAATGCACCGACGCCTTCTGCACCTATGACGACTACAACTGGGACTGGTCCCTGCAGCACCTGACCGTAACCTGCCTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGCGTCTTCCATGCCGGGGACTGCGGGATGCACCACAAGAAGTCCGTGTGCATGCCGTCCAGCCAAAAGACCAAGATAGATACCATTCTACAGAGCAGCAGCAATCAGCTGTTCCCCAAGAACCTGCTGATTACTAAGAGACTTCCGGCTAACGGGGCAGGGGGGGTGGCGCCCCACGTGAAGAACGGCGGTTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCCTCGATTACAGTGACCTTATTATAATTGTTAGGCCTATATCGTTACTATTCTCTTTTTTGCATCCTCTGAATTTAAGAAAAAGAAAGCCTTTTGAAAAGAATCTTCATGGAATATTTCTTCATATTGCCTGTTTTATCTGACTCTTCCAAATAAACAGTTTGTTGGGTTTGGGC
>XM_021600904.2
TCTTGAGAGACCCTATGGAGTAATGCATTGTGGGAGTCAAAGCTAGGCAGTGGTTCCGTATTTGGTACTTCTTGCCaacgtaagctagctagctagctggctaatgtgtTATTTTGCCCCGAAATTGGGAGCAGGAGAGAAGGAATGGAGGAGAATGAATACCTCGATTCACCGCACTGTTAATTTCGGCAGAGAAAGCTGCACAGCACGACTAATATTTTAGTGGGTTCCATGCACAACTCTACACTGCAGCCTCTGAGACCAACATGCCTTATGGGAATCTCACATGGCATCACTTATATTCCACAAAGACACATGTCTACATTCTAAAAATGTGTGCTAGCAACAAGTGTTAGCAACCAACAGAATTGTAAACTGTTTTCTATcaggactccctgcctgcctcctttCCTGCCTGCCTCTCCCAAGCACAGCAGTGCCATTAGAAATTGCAAACCTGCCTTTTTTCAGTTTCTCTACAATCAACTCCTCTCCTTCCCAAGGGGGGTGACTGCCTGTCATGAGATTCCGAGTCTACAAGAGGAAGGTACAATACACGACGAGTCCCAAGTCATGTGTGGTGATACTGacgctggtggtggtggtgtgtggccTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGGGTGGTGGTCCTGAAAGAGGCTGAGGGGGCGAGGAGAAGCAGCAGTAGCCAGGTGCAGCCACAGCCGCAGGCCACACCTGCAGTCAGCCGGATACCTAACCTACCACCCATCGCACCTGTCAACGAGACACACCAGAAGAACCAGCCTGAAAAGCACCTGGAGAAAGAGGAGGTGGTAAAACCAGAGGTGGACAACACCACCCAGGTCTACCGTGGCATTGTGTTCCAGCTCAACTTTGACCAGACAGTGAGACATGAGGAGCAGTTCAGGGCAGCGAGGAAGAAGGATGATCTGGTGGTGGTGGTCCAGGTGCACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGAAAGGCCAGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCACGACTTCTGGTCCCCCGAGATCAACCAGGTGGTGGCCTCAGTGGACTTCTGCCAGGTTCTCCAGATCTTCTTTCCCTTCAGCATCCAACTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGCCCCAGAGACATTTCCAAGATAGACGCCTTAAAGCTGGGCTGCATCAACGCAGAGTACCCCGACTCGTTTGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCCCTGAAGGACCACCGGGGTCTGGTGCTTCTCATCGAGGAGGACCACTTCCTCTCCCCTGACTTCCTCCACTTCCTCAAGCTGATGTCCATCCTGAAGAGGGAGAATTGCCCTGACTGTGACATCCTATCTCTGGGGAGCTACGGCCACATCAGCTACCCCAGTAAAGCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAACTCATTCAATGCACCGACGCCTTCTGCACCTATGACGACTACAACTGGGACTGGTCCCTGCAGCACCTGACCGTAACCTGCCTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGCGTCTTCCATGCCGGGGACTGCGGGATGCACCACAAGAAGTCCGTGTGCATGCCGTCCAGCCAAAAGACCAAGATAGATACCATTCTACAGAGCAGCAGCAATCAGCTGTTCCCCAAGAACCTGCTGATTACTAAGAGACTTCCGGCTAACGGGGCAGGGGGGGTGGCGCCCCACGTGAAGAACGGCGGTTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCCTCGATTACAGTGACCTTATTATAATTGTTAGGCCTATATCGTTACTATTCTCTTTTTTGCATCCTCTGAATTTAAGAAAAAGAAAGCCTTTTGAAAAGAATCTTCATGGAATATTTCTTCATATTGCCTGTTTTATCTGACTCTTCCAAATAAACAGTTTGTTGGGTTTGGGC
>XM_021600907.2
TCTTGAGAGACCCTATGGAGTAATGCATTGTGGGAGTCAAAGCTAGGCAGTGGTTCCGTATTTGGTACTTCTTGCCaacgtaagctagctagctagctggctaatgtgtTATTTTGCCCCGAAATTGGGAGCAGGAGAGAAGGAATGGAGGAGAATGAATACCTCGATTCACCGCACTGTTAATTTCGGCAGAGAAAGCTGCACAGCACGACTAATATTTTAGTGGGTTCCATGCACAACTCTACACTGCAGCCTCTGAGACCAACATGCCTTATGGGAATCTCACATGGCATCACTTATATTCCACAAAGACACATGTCTACATTCTAAAAATGTGTGCTAGCAACAAGTGTTAGCAACCAACAGAATTGTAAACTGTTTTCTATcaggactccctgcctgcctcctttCCTGCCTGCCTCTCCCAAGCACAGCAGTGCCATTAGAAATTGCAAACCTGCCTTTTTTCAGTTTCTCTACAATCAACTCCTCTCCTTCCCAAGGGGGGTGACTGCCTGTCATGAGATTCCGAGTCTACAAGAGGAAGGTGGTGATACTGacgctggtggtggtggtgtgtggccTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGGGTGGTGGTCCTGAAAGAGGCTGAGGGGGCGAGGAGAAGCAGCAGTAGCCAGGTGCAGCCACAGCCGCAGGCCACACCTGCAGTCAGCCGGATACCTAACCTACCACCCATCGCACCTGTCAACGAGACACACCAGAAGAACCAGCCTGAAAAGCACCTGGAGAAAGAGGAGGTGGTAAAACCAGAGGTGGACAACACCACCCAGGTCTACCGTGGCATTGTGTTCCAGCTCAACTTTGACCAGACAGTGAGACATGAGGAGCAGTTCAGGGCAGCGAGGAAGAAGGATGATCTGGTGGTGGTGGTCCAGGTGCACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGAAAGGCCAGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCACGACTTCTGGTCCCCCGAGATCAACCAGGTGGTGGCCTCAGTGGACTTCTGCCAGGTTCTCCAGATCTTCTTTCCCTTCAGCATCCAACTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGCCCCAGAGACATTTCCAAGATAGACGCCTTAAAGCTGGGCTGCATCAACGCAGAGTACCCCGACTCGTTTGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCCCTGAAGGACCACCGGGGTCTGGTGCTTCTCATCGAGGAGGACCACTTCCTCTCCCCTGACTTCCTCCACTTCCTCAAGCTGATGTCCATCCTGAAGAGGGAGAATTGCCCTGACTGTGACATCCTATCTCTGGGGAGCTACGGCCACATCAGCTACCCCAGTAAAGCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAACTCATTCAATGCACCGACGCCTTCTGCACCTATGACGACTACAACTGGGACTGGTCCCTGCAGCACCTGACCGTAACCTGCCTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGCGTCTTCCATGCCGGGGACTGCGGGATGCACCACAAGAAGTCCGTGTGCATGCCGTCCAGCCAAAAGACCAAGATAGATACCATTCTACAGAGCAGCAGCAATCAGCTGTTCCCCAAGAACCTGCTGATTACTAAGAGACTTCCGGCTAACGGGGCAGGGGGGGTGGCGCCCCACGTGAAGAACGGCGGTTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCCTCGATTACAGTGACCTTATTATAATTGTTAGGCCTATATCGTTACTATTCTCTTTTTTGCATCCTCTGAATTTAAGAAAAAGAAAGCCTTTTGAAAAGAATCTTCATGGAATATTTCTTCATATTGCCTGTTTTATCTGACTCTTCCAAATAAACAGTTTGTTGGGTTTGGGC

Function

symbol description
mgat2 Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi stack and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).

NR:

description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X2

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600906.2 False 2342 mRNA 0.53 3 30816416 30823059
XM_021600904.2 False 2108 mRNA 0.53 3 30817802 30823059
XM_021600907.2 True 2078 mRNA 0.53 3 30817802 30823059

Neighbor

gene id symbol gene type direction distance location
LOC110522479 NA coding upstream 18729 30796219 ~ 30797687 (+)
LOC110522472 rs30 coding upstream 858858 29952461 ~ 29957558 (+)
LOC110522470 prpf39 coding upstream 864289 29942176 ~ 29952127 (+)
LOC110522467 LOC106608085 coding upstream 973506 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 1018276 29787568 ~ 29798140 (+)
LOC110522488 hs90a coding downstream 346592 31169651 ~ 31182712 (+)
ppp2r5cb LOC106608134 coding downstream 364167 31187226 ~ 31227364 (+)
slc25a29 LOC106608124 coding downstream 569120 31392179 ~ 31401929 (+)
LOC110522495 NA coding downstream 586229 31408651 ~ 31412134 (+)
LOC110522493 LOC106608104 coding downstream 595407 31417955 ~ 31422086 (+)
G341909 NA non-coding upstream 1817 30813598 ~ 30814599 (+)
G341914 NA non-coding upstream 10801 30805393 ~ 30805615 (+)
G341912 NA non-coding upstream 13722 30800295 ~ 30802694 (+)
G341880 NA non-coding upstream 62212 30753318 ~ 30754204 (+)
G341878 NA non-coding upstream 64670 30751084 ~ 30751746 (+)
G341921 NA non-coding downstream 2494 30825553 ~ 30826284 (+)
G341922 NA non-coding downstream 3491 30826550 ~ 30826954 (+)
G341983 LOC106608127 non-coding downstream 131697 30954756 ~ 31012694 (+)
G341985 NA non-coding downstream 133026 30956085 ~ 31107772 (+)
G342050 NA non-coding downstream 272629 31095688 ~ 31096427 (+)
G339928 NA other upstream 1479477 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 1649420 29166518 ~ 29166996 (+)
G339693 NA other upstream 1900877 28914599 ~ 28915539 (+)
G339660 NA other upstream 1957261 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 3214860 27537262 ~ 27601564 (+)
G342538 NA other downstream 558767 31381826 ~ 31382749 (+)
G342571 NA other downstream 628074 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 962806 31785865 ~ 31786206 (+)
G343958 NA other downstream 1871927 32694986 ~ 32704371 (+)

Expression


Co-expression Network