LOC110521085 (LOC100380634)


Basic Information

Item Value
gene id LOC110521085
gene name LOC100380634
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33469529 ~ 33489784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110521085
ATGATAAATGATATACATTTACGACCAGTCCTGAGCACTAACATCTACAGTAGACACTAcaatgtCGGGAAATCCAGCAGTGGTGATGCGTTTGGTGGCTTCGGCTTACGCAGTGGCAGAGAAGGCAGGAGCTATCATACGGAGGGATCGTGGAAAAAGTTGGACTTACTGAACACGGGGGCTAACGATCTACAGACACTGGCAGACAGGCTGGTCCAGCAGAGCATATGTGCCCCCCTATCCAAAAGCTTCCCCAAAATCACCATCATCGGAGAGGAGGATCTGCCAGAGGAGGCTGTCAAAGAAGACCTGATTGAGAGCAGTCAGTCTGAAGAAATCCTACAAGTCCTGTCCATTGGAATACAGTGCCCTGAAAGAGGAGCTGGTTGTGTGGGTCGACCCCCTTGATGGCACTAAAGAATACACTGAAGTCGGCCAAGTGTCTTTACCTGCCACATCAGGTCCAGATGTGTCATACGGGGTCGGACGCCCAGCTTCTCAGCACGACTCTCCGTATGGTGACACTGTACTGATCGGCATTTCATATGGAGGGAAGGCCATTGCCGGGGTCATCAACCAGCCCTTCTTCAATTACCAGTTGGGGACGGAGACAGCAGACATGTGGGGAATGCCAGGACTGGGCGCCTTTGGGTTCGAGCTACAGGAGGTTCCGGATGGCCGCCGCATAGTCACCATGACCCGTTCCCAGAGCAACAAACTTGTCACAGACACCGTGGATGCCATGATTGTTAAGCTTGTGGAGGGGAAGGCCTCAGCCTGTGTCTTTGCCAGTCTAGGAACTAAAAAGTGGGGCACTTGTGCCCCTGAAGCCATCCTGCATGCATTAGGAGGTAAGCTGACAGACATGCATGGCAGTGCGTTGTGTTACGATGCTAATGTTAAGCACATTAATTCTGCTGGGGTGCTGGCCACACTACGCAACCTCCAGTACTACACCAGCACCAACAAGTGCCCCAGTCAGTCCTGCAGGCCCTGATTGATAAATATAATTTTACAACTCTTATTGTCCAAAAACACTGCCaaattaaaacatttctagcACCTAGTCATAAATGGAATGTTTTAATTTCCATAATTACTTGTATAAAATAATCTGTTGTACCCCAAAGTAACTAATCTTGAGACAAACAACTAGTAA
>TU389960
TTTACGACCAGTCCTGAGCACTAACATCTACAGTAGACACTAcaatgtCGGGAAATCCAGCAGTGGTGATGCGTTTGGTGGCTTCGGCTTACGCAGTGGCAGAGAAGGCAGGAGCTATCATACGGAGGGATCGTGGAAAAAGTTGGACTTACTGAACGTAGAGTGGGGCAAAGTGCTGAATTGATGGAGATtgatagacagtgagatggaggcTGAATGTTGTTTATAAATgatgtctcactctctcttatGTGGACAGACGGGGGCTAACGATCTACAGACACTGGCAGACAGGCTGGTCCAGCAGAGCATATGTGCCCCCCTATCCAAAAGCTTCCCCAAAATCACCATCATCGGAGAGGAGGATCTGCCAGAGGAGGCTGTCAAAGAAGACCTGATTGAGAGCAGTCAGTCTGAAGAAATCCTACAAGTCCTGTCCATTGGAATACAGTGCCCTGAAAGAGGAGCTGGTTGTGTGGGTCGACCCCCTTGATGGCACTAAAGAATACACTGAAGTCGGCCAAGTGTCTTTACCTGCCACATCAGGTCCAGATGTGTCATACGGGGTCGGACGCCCAGCTTCTCAGCACGACTCTCCGTATGGTGACACTGTACTGATCGGCATTTCATATGGAGGGAAGGCCATTGCCGGGGTCATCAACCAGCCCTTCTTCAATTACCAGTTGGGGACGGAGACAGCAGACATGTGGGGAATGCCAGGACTGGGCGCCTTTGGGTTCGAGCTACAGGAGGTTCCGGATGGCCGCCGCATAGTCACCATGACCCGTTCCCAGAGCAACAAACTTGTCACAGACACCGTGGATGCCATGATTGTTAAGCTTGTGGAGGGGAAGGCCTCAGCCTGTGTCTTTGCCAGTCTAGGAACTAAAAAGTGGGGCACTTGTGCCCCTGAAGCCATCCTGCATGCATTAGGAGTGCACCCTGGACACCTggaaggagtggagaagagagtgAGCGACTAGACTTGAGCCAGATTGTGTCCTTGCTGGAAGGGAGATGGCCCCATCCGGCAGAGCCGCAGACACTCGAGGGAGAC
>TU389956
CATTTACAATTGGTTGACAGATATGTAATTATTACCTTTGATGGACAGTGGAACAACACTAGGCCCTCCAACACTGCTCCCACATTGAGTAGCTGCGTTTTAAGGCAGCCCAAAGAATAATGACAGACACGAGAGGCAGGGTCAACAGcactgttccatttattccattcaaaGAGTGAAACGAAAATTTTACAAATCTCAAAACTGTTTAAAACACTGAGTTTCCAACTTAGATCAGAACAAGGCAAAGGGCGAGATATAGCCAACTTCAAAAACCTAAAATATTATTTGAATATTCCTTAGTAAGCTCATTAGTTGGATGACAATTCTGAACCAGATATTGGAATCATCTCCTCTTGAAAAGGTACACATACTGTATTCACTATTCACGTTCTGATGCCTTGCTGGTCGTTGACATCGTCAGCCTCTTTCGGCTGTCCTAAGATCTACCACTAAGGGGTAGCAATGTCTAAGTAAGTGATCCAGCTACAAAGTGCCATCTCGGCCTCACCCCGAGCTTGGTAAGCATGTGCTTGACCCCCGTGTGATGTAATATGCCATGTTTACAAGAACTGCAGGGGCAATGGGGAATGCTGAAAACAGCTTGTGTAAAGTTAAAAACTTGTAATCGTCTAGTGTGACCAACTGGCCGTGTTTGAGAAATAATATTCAACACCAATAGAAATCCGGTGCCTTTGACTCTTGCCTTAACTTTCCAAGCCACCCCCATCTATACAGGCACACAGTTAAAGCAATGTCCATAAACAGTCTTCAGCAATTGAAGCAGGTTCGGTGGATACGAGGAGAGGGCTGGTGTGATGGACAAGATTGATTCAAAACCAACAGGCATTTTAAACACCCATTTGTTGTGAACCCTTTGAGTTGAGGACACATGACCTTAACTGTACTAGTTGTTAACTGTTAACATTTATACACAGTTAAATGTACAGAATGTGTATACAATACATGCCCAGTGTGTATATACTGTCATTTTGTATGGTTTTGATAATATGCATTTGTACAAGTACTTTCAAAGTTGTTAATAGTTCATTAGTGTCTCCATAAAGAGAGAAATGAGTCCAACGGGGTGAAAATGACTTGCTCCAAACTCAAGAGGCTAAACCATTCCACTCAGTTACTGTAGCCAAAACAGCCAATGTTATTAGTAATATTGTGAGAAGGTTACACATTAGCAGGGTAAATTGTGAGACTGGGTGGAGAGGATCACTCACGTTATTGGTCTTGAAGAGTCAAGGCTGGGGTAAAGAACCCAACTCActcgcgcacgcacacactcatatTATTCAATACTTTTTTCTATACCTGAAGGCAGAAAAGCGTCCCTTCAGAATGCATTGCCCCTTTCCACAAAAGGTGTGTATCGTATTGCTGCACCTTAGCAACCCATTTCATAGCATTGAAAAACCACATGTCACTATTAATAAAAATACCAACAAACAAGCAAAGAAAAAAAATACGTTCACAGCAAAGATTTAATATTTTACACATGAAATAGGTGAGTGGGCGTCAGGGGGGCTAGAGCGCTTCCCatagatgggagggaggggacaggACGTTGCAGGGGGCAATAGAGGAAATGGTGCAAGGAGGAGGCGAGATGGGGGCCAGGCGCTCACCTCTTCTTTGGGGCTTGGGCAGTACGAGGCGGGGTTACAGGGCGTCCCGTGTTCACTCCCCCATATTGGTACTTAGCTTTTTTCTCTGACGGCTTCAAAATCTGAAAGGAACACATGAGGGACTCATCCACGCTCATCATGCCCCCAGCGTTGTCAAACTCCCCGCAGTAGTTGGGAGCTGAGAACAGCGTCACCAGCTGCCGTTTGGCAAAGAACTCATAGCCGTCCTCAACAACCTGGTGGGCTCTGCAGATGAGGTCCAGGTCGTGGCGGTTGAGGAACTTGCTGACCACGTCGGCCCCAAAGGTGAAGGAGACGCCCCGGTCGTTTTCCCCCCAGCCCTGCACGTCTTTGTCTGGATCTGACCACAGCAGGTCACACAGCAGGCCTGTGTCAGGGACATCAGTGGGCCTCATGATGCGTCGGATTTGCTCCATGGACTGCAGATCAGGAGAGAGACCTCCATGGCAGCAGAAGATCTTCTCATCGATTATAGCGGCAATGGGCAAACAGTTGAAGCAATCTGTGAAGGTCTTCCACAGCTTTATGTTGAATCTGCGTTTGCACTCGTCATAGAAACCGTAGATGCGGTTGATGGAGGCACATTCGTGGTTTCCTCTGAGCAGGAAGAAGTTCTCAGGGTATTTGATCTTGTAGGCCAGCAGTAGGCAGATGGTTTCCAGGGACTGCTTGCCTCGGTCCACATAATCCCCCAGGAACAGGTAGTTAGCCTCCGGGGGGAAGCCCCCGTACTCAAAGAGCCGCAGCAGGTCTGTGTACTGGCCATGGATATCacCACAAATTTTGAGCGGCGCCTCCAGCTCCAGTAGGATGGGCTGGCTGAGGAAGATCTCCCGGGACTTGATGCACAACCCCCGCACCTCCGCCTCCGTCATCTGGACTATCTTCCCTGGACGGCATCCTCGCACTTCAAGCAATCGGGAGATGATGCTGTCAACGTTGAGCTCGCTTTCCGCCATTTTCTtcaaaaaactgaaaactacTACGCAGAGAGAACTATCTCCTACTCACCACCCGGGGTCGTGGTTTACTACTGTAC

Function

NR:

description
Serine/threonine-protein phosphatase PP1-beta catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110521085 False 1159 mRNA 0.47 10 33469529 33475771
TU389960 False 1057 TUCP 0.53 8 33472052 33486197
TU389956 True 2697 TUCP 0.47 8 33476693 33489784

Neighbor

gene id symbol gene type direction distance location
LOC110522514 LOC106571629 coding upstream 58474 33409113 ~ 33411055 (+)
LOC110522513 LOC106568623 coding upstream 63560 33404409 ~ 33405969 (+)
LOC110522512 LOC106568622 coding upstream 67374 33389872 ~ 33402155 (+)
LOC110522510 LOC106608180 coding upstream 88559 33358956 ~ 33380970 (+)
LOC110522508 ccr6 coding upstream 324360 33140884 ~ 33145169 (+)
LOC110522521 NA coding downstream 109174 33584945 ~ 33586386 (+)
LOC110522523 LOC106608181 coding downstream 157419 33633190 ~ 33636494 (+)
LOC110522524 LOC106608181 coding downstream 169457 33645228 ~ 33647432 (+)
LOC110522526 LOC106608180 coding downstream 178289 33654060 ~ 33656575 (+)
LOC110522527 LOC106608180 coding downstream 193401 33669172 ~ 33673911 (+)
G344606 NA non-coding upstream 26444 33442863 ~ 33443085 (+)
G344605 NA non-coding upstream 29712 33439535 ~ 33439817 (+)
G344589 NA non-coding upstream 46448 33422762 ~ 33423081 (+)
G344588 NA non-coding upstream 46916 33422303 ~ 33422613 (+)
G344587 NA non-coding upstream 48153 33421144 ~ 33421376 (+)
G344636 LOC106608185 non-coding downstream 35803 33511574 ~ 33512323 (+)
G344638 LOC106608185 non-coding downstream 40709 33516480 ~ 33519692 (+)
G344641 NA non-coding downstream 49570 33525341 ~ 33527572 (+)
G344650 NA non-coding downstream 58545 33534316 ~ 33536262 (+)
G344659 NA non-coding downstream 67058 33542829 ~ 33543028 (+)
G343958 NA other upstream 765158 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1683323 31785865 ~ 31786206 (+)
G342571 NA other upstream 2018053 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 2050273 31417955 ~ 31422086 (+)
G342538 NA other upstream 2086780 31381826 ~ 31382749 (+)
G344647 NA other downstream 76356 33552127 ~ 33554003 (+)
LOC110522536 LOC105024319 other downstream 915202 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1061230 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1344671 34807607 ~ 34831281 (+)

Expression


Co-expression Network