LOC110521112 (LOC106608303)


Basic Information

Item Value
gene id LOC110521112
gene name LOC106608303
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40982406 ~ 40990428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975446.1
tatTCGCCTCTAAACCTAGTGGGATCCGGACTCCAGCAACAACCGTCAAAAAATGCGTTTGACTACGACGCACAAGTGCACAGGATTCGGAATCCAGGAGATTCTGGGTTTGAATAAGGAGCCACCCGCGGTTACGCGGCGTCCATTGGAATCTTTGCCGCACAGAGCGCACCTTCTGGCAGCTAGATCGGCTTTGGACTCGGCGGGAGTCGGGATTGGGATGGGAATTATTGGTCCAGGAGGAGGAATTCATTCGTTTTACAGCCAGCCTGCCTTTCTGGAGGTGTTACAGGAGGCGCAGAGTGTTCACCTTCAGCCGCTCAACGGGGCCAGGGCAATGGGACAGCTTGATGCGCACTACTCCGCAAGCTGCTCTGATTCAGATGATATATCCTCCAGTGAAAAGACATTTCACTCCAAATCATTGATGAACCAAAACAAGAACAGAAAGAAGAGACGACACAGGACTATATTCACGTCAGATCAGCTGGATGAGTTGGAGAAGGCTTTCAACGAGGCCCACTACCCTGATGTTTACGCCAGAGAGATGCTCTCCATGAAGACTGAACTTCCAGAGGACAGGATACAGgtTTGGTTTCAGAACCGCCGTGCCaagtggaggaagagggagaagtgTTGGGGTCACAGCAGTGTGATGGCGGAGTACGGCCTGTACGGTGCCATGGTCCGCCACTCCATCCCTCTGCCCGAGTCCATCCTCAAGTCAGCCAAGGACGGTATCATGGACTCCTGTGCCCCATGGCTACTTGGTATGCACAAGAAGTCTATAGATACCCCTGTTCCGACCTCTCCTGTAAAACTGGAAGCTCCCCTCTCCAAACTTCCTGCcagggaacgagagagggagagagtggtggagcgaaaggtagaggaagaggaggaggaggagaggagagagaataccAGATCGCCCATATCCAAAGAGGAACTGAGAGAGAATAGCATCGCAGCACTCAGGGCTAAAGCTCTGGAACACAGCGCTAAGATGCTGGGGACACATCCTGATGGAGGACCACTGGGGACAGTTTCAGGGGACGTACCAGTGGGGCAGAGACAGCCGACGGAGACAGAGGACAAACAGACAGAAGGACAGTTGAATCCTGCAGAGAAGATAGAGCCCAGTCACTGATATGAACGCATTCTTCTAAAGACTATGCTAGGGCCTGTTGATGCCCTCTCTGTAAAGAACACTGTTTACATACTCCTGACATCCATACCATTATAAAAAAAGATAGTATTAGTTACAATACACATTATTCTTTCTAGCAAAATATATTCATAATGTTCCTATGACACCAATACCGGATTTCGTCAACCTCCACAATCCTCCTGTCATGGGGATTCATTTTGTCCAGATCAAATTTTCCATCATGGGAATTCCAACTCAGTAAACTACTACAActataccctggtctatacctGTCTACTATGTTGTAATCTGGCAGCTATTTGGCAGCTTGCAATTGTACAACTTTAAGAAGACTTAACTATTTGGTTACATGGATCAGTCTTTGCATATTGTACTGGCCCATATTATTTTCCAAGGTAATAGTCAAACCACACAAGGTGAAAGATACATGTTATGATAAAAATGCTGTGGAATAATGTGAACATCAAGAGACTCATCTTGAGAGGATGCATGAACATTTTTACACAAAATAGACTTATCCCCTTGAAATGTACACCTGCtcgtctaacatctcattccaaaatcatgggcattaacatggagttggtccccactttgctgctacaaccagcctccactattctgggaaggctttccactagatgttggaacattgctgcggggact
>TU398733
tggagcgaaaggtagaggaagaggaggaggaggagaggagagagaataccAGATCGCCCATATCCAAAGAGGAACTGAGAGAGAATAGCATCGCAGCACTCAGGGCTAAAGCTCTGGAACACAGCGCTAAGATGCTGGGGACACATCCTGATGGAGGACCACTGGGGACAGTTTCAGGGGACGTACCAGTGGGGCAGAGACAGCCGACGGAGACAGAGGACAAACAGACAGAAGGACAGTTGAATCCTGCAGAGAAGATAGAGCCCAGTCACTGATATGAACGCATTCTTCTAAAGACTATGCTAGGGCCTGTTGATGCCCTCTCTGTAAAGAACACTGTTTACATACTCCTGACATCCATACCATTATAAAAAAAGATAGTATTAGTTACAATACACATTATTCTTTCTAGCAAAATATATTCATAATGTTCCTATGACACCAATACCGGATTTCGTCAACCTCCACAATCCTCCTGTCATGGGGATTCATTTTGTCCAGATCAAATTTTCCATCATGGGAATTCCAACTCAGTAAACTACTACAActataccctggtctatacctGTCTACTATGTTGTAATCTGGCAGCTATTTGGCAGCTTGCAATTGTACAACTTTAAGAAGACTTAACTATTTGGTTACATGGATCAGTCTTTGCATATTGTACTGGCCCATATTATTTTCCAAGGTAATAGTCAAACCACACAAGGTGAAAGATACATGTTATGATAAAAATGCTGTGGAATAATGTGAACATCAAGAGACTCATCTTGAGAGGATGCATGAACATTTTTACACAAAATAGACTTATCCCCTTGAAATGTACACCTGCtcgtctaacatctcattccaaaatcatgggcattaacatggagttggtccccactttgctgctacaaccagcctccactattctgggaaggctttccactagatgttggaacattgctgcggggacttgcttcgattcagccacaagagcattagtgaggttggacactgatgttgggcgattaggcctggctcacagttgccgttccagttcatcccaaagatggggttgaggtcagggctctgtgcaggtcaatcaagttcttccacaccgatctcgacaaaccatttctgtatggacctcgctttgtgcaaggggacattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaatgttggaatcacagaatcgtctagaatgtcattgtattatgTAGCGTTaaaatgtcccttcactggacctaaggggcctagaccgaaccatgaaaaacagccccagaccattattcctcctccactaaactttacagttggcactatgcattcgggcaggtagcgttctcctggcatccgccaaacccagatttgtccatcggactgca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975446.1 False 1837 mRNA 0.48 5 40982856 40990428
TU398733 True 1412 lncRNA 0.45 1 40982406 40983817

Neighbor

gene id symbol gene type direction distance location
LOC110522633 LOC106608304 coding downstream 4705 40948355 ~ 40978151 (-)
LOC110522630 LOC106608306 coding downstream 69603 40893019 ~ 40913253 (-)
elp3 elp3 coding downstream 204709 40751754 ~ 40778147 (-)
LOC110521110 LOC106608312 coding downstream 288578 40678164 ~ 40694278 (-)
LOC118964398 NA coding downstream 370576 40610955 ~ 40612280 (-)
LOC110522634 LOC106608299 coding upstream 64826 41055254 ~ 41071087 (-)
LOC110522635 ylpm1 coding upstream 99907 41090335 ~ 41154170 (-)
LOC110521118 LOC106571038 coding upstream 224894 41215322 ~ 41316313 (-)
LOC110522637 LOC106608296 coding upstream 538823 41529251 ~ 41573415 (-)
LOC110522638 LOC106608314 coding upstream 586738 41577166 ~ 41586944 (-)
G352140 NA non-coding downstream 29175 40953363 ~ 40953681 (-)
G352110 NA non-coding downstream 37618 40944693 ~ 40945238 (-)
G352111 NA non-coding downstream 39950 40942206 ~ 40942906 (-)
G352108 NA non-coding downstream 42287 40936776 ~ 40940569 (-)
G352164 NA non-coding upstream 14310 41004738 ~ 41005080 (-)
G352165 NA non-coding upstream 15787 41006215 ~ 41006555 (-)
G352167 NA non-coding upstream 18110 41008538 ~ 41008858 (-)
G352172 NA non-coding upstream 20071 41010499 ~ 41011351 (-)
G352174 NA non-coding upstream 22831 41013259 ~ 41013532 (-)
G351896 NA other downstream 304742 40677466 ~ 40678114 (-)
G351886 NA other downstream 317378 40665092 ~ 40665478 (-)
G351054 NA other downstream 1263725 39718784 ~ 39719131 (-)
G350563 LOC106608153 other downstream 1831619 39150509 ~ 39151237 (-)
G350352 LOC106608159 other downstream 2096974 38884352 ~ 38885882 (-)
G352537 NA other upstream 431819 41422247 ~ 41422752 (-)
G352723 NA other upstream 537540 41527968 ~ 41529100 (-)
G352722 NA other upstream 599961 41543179 ~ 41686007 (-)
G352818 NA other upstream 621085 41611513 ~ 41611982 (-)

Expression


Co-expression Network