LOC110522638 (LOC106608314)


Basic Information

Item Value
gene id LOC110522638
gene name LOC106608314
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41577166 ~ 41586944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601107.2
gagagagagaggtatatatagagagcggtagagagagagcgtgagaatagagagagtgagagagagaagttctTTCTCATTAAGCGACCAACCAGGTTCAGCTTAGCacactgtctgaacacacacacagagcgacagcttagcacactctgtctgaacacacacagacacacagcgacagcttagcacactctgctgaacacacacacagcgacacacacacacataaaaagcAGAAGTGGTGAGAGGCACAGGGTTTGGGGCAACGTGGTTGGCTATGGCTCACGGCTCTGACAGCGATGACTCCAGTTACACCAAGTCTCCTTCGCCAGCGGGCAGCAGGCGGGGCTCCTCAGACAACATAAAGAAAGTaatgagaagagagaagaacCGTATCGCTGCCCAGAAGAGCAGGATGAGACAGACCCAGAAGGCAGACAGTCTACACCTGGAAAGTGAGAACCTGGAGAAGGAGAACGCGGCTCTGAGGAAGGAGGtgaagaaactcaaagaagaAGCCAAgtatctctcctctgtcctgactaCCCATGAGCCTCTCTGCACTGGCCTGCCCCCCCAGATGACCCCTGACCTCATCTACTCCCCCCATCATCACTCCGTCTCCCCCCACCATCACGGGAGCAATGTCTTCCACCACCAGCACAGCATCGCTGTGTCGCACTTCCAGCACTGATCACCACCGACCACCAGGGGGTGCTGAAGAGAAGCGGGAGAGGTTTACTGACCTGGATATAGTGGGTGAAGAGAGCCACTTGAACTAGCCTCGCTAAACCAGGTCAAGAGGCTACACTTGAACAAGATGAAGttaatgaatgttttttttttgtttcaacGGGAACAGACGGCACTCATGAATGATGTCTTTGCATCAGATCAACAATTTTCTGATATTAAAAGATGACAAAGGCTTcttttacacaggcagccaaattctgatcttttgcccaattattgtcaaaatgtctgattggtcaaaaaaataattaatgacaaaagatcagaattgtgtAAAGGCACCTAGATGGTAATTTCAAATGTATGACTCGACCATAGAATCAAGACCTTGACTATGCCAATAGTCAACATCTACAGGACATAAAACCAGCATGATTGaatgattttttttattgtacTATTGACATTTATACAACAATGAAAGGATTCCGTGTTTACGTTTCAAGTAATTTATATTATATACTATTACAACGCTTTGCCGCCAGGACTGGGACGATACTAGTATCACGAAGATACTTGTTAGTATTGTGGCAAGGGaacaaaacacaaagcagatttaacttctttagaaAAACAGTCTTAATGTTGGAAACGAACATCACTATGTtatcatccagagtcacatgtaGTTAttttccaggctatatcacaacctaTGTTCCATAAAGCAGGTTTAggaccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatATGTTCCATACAGCAGGTTTAGTACCAGGCTATATGACAACATATGTTCCATACAGCAGGTTTAgtaccaggctatatcacaacatatgttccatacagcaggtttttaaaggaccaaagaatCTGATCTGGTTCGTGTTTTCCTTCTTTGCCATAGAAATAAATATCGCAATACTGGTATCATCCCAGcctttagttttttttttgtgtgcatttCTCATGTTCACGACTACCACTATTGCACATGACTGATTGGAGCGTTGGAAATAGCTTGGATTACTCAATGATGTGTacattattttactatttttctCACAAAACAGCTGCTTTTCTAGTCTGATTTGAATACGTGTACATTCTGCCTAAAGTGAAACAGTTTGAAAATAACTTTGTTGACTCAAGAGTCTACCGTTCGAATCATCTTGAATTCgtttttt
>TU399546
CACTAGTTCTCCTCGTACATACCTGGATGGTTGGCTGGGTCTCATCTCCaaaactggcaccctattccttttatagtgcactacttttgaccgaggTTCATAGAGTCcataggggccctggtcaaacgtagtggcACTATAAATGGAAAATAGGGTGTCGTTTGGAATGCATGCTAGGTCTCACCCCCCTTGTGACTATTCCCCTACAGCTGGTGAAGTGGCTGCTGAGATAGGAGTCGTGTAGGCCTGTGGAAACTCCAAGGTTCACCACCTTGTGACTATCCCCCTACAGCTGGTGAAGTGGCTGCTGAGCTAGGAGTCGAGTAGGCTGGAGGAAACCCCAAAGCTATGTGCAAAAATGTGTGACGACCCAGTCATGCATGGTAAGTGTGTGTCTAAACTACACTGTCGTCGATGCTCTGTTAGCAGGTAATCAGACtgtccatccttcttcttcttaAAGCCAGTATGTGTTAGGCTGCTGTCAGATCTGTGCTTATATTGATTTATATTTACAAATATttatcctggtcccagatcagttttgTGCTCCACGCTGGAGTGTACAAGAGCAcaacacagatctgggaccagggatAAATATTTGTATCTAACATGGAACAATTCGATTTCTTCAAATTCCTGGTCAATTGAATTGCTGTTATTGTCATTTCATAAATCACCATCCCGATCTATGACACTGTGTTTAAATGTCACAGGTGGTCGGTGGCACCaataattggggaggacgggctcgtggtaatggctggagtggaatcagcggaatggtatcaaacacatggtttccatggtttccgtgtgtttgatgccattccattcgcttggttccagccattattatgagccgtcctcccctcagcagcctccactgAAGAATGGACTTCCTGTGGGGGTTTGCTTGGTAGTAGATATGCCCCTATAGGTGCAAACTTTCCAAGGGTCATGTGACTTCCAGTCTGGCGTCAATAAcccagttttttttatatatatatatatatttttttaccagaAACCACAACAGACGCTGGCTGATAATTAGGcagacacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagatagagaggaaggaaggagggcaggcgggagatagagaggtatagagagagagagagagacagagagagagagaggaaggaaggaaggtaggaaggaagagagagagagagaggtatatatatagagagaggtagagagagagagagagagagagagaggtatatatagagagcggtagagagagagcgtgagaatagagagagtgagagagagaagttctTTCTCATTAAGCGACCAACCAGGTTCAGCTTAGCacactgtctgaacacacacacagagcgacagcttagcacactctgtctgaacacacacagacacacagcgacagcttagcacactctgctgaacacacacacagcgacacacacacacataaaaagcAGAAGTGGTGAGAGGCACAGGGTTTGGGGCAACGTGGTTGGCTATGGCTCACGGCTCTGACAGCGATGACTCCAGTTACACCAAGTCTCCTTCGCCAGCGGGCAGCAGGCGGGGCTCCTCAGACAACATAAAGAAAGTaatgagaagagagaagaacCGTATCGCTGCCCAGAAGAGCAGGATGAGACAGACCCAGAAGGCAGACAGTCTACACCTGGAAAGTGAGAACCTGGAGAAGGAGAACGCGGCTCTGAGGAAGGAGGtgaagaaactcaaagaagaAGCCAAgtatctctcctctgtcctgactaCCCATGAGCCTCTCTGCACTGGCCTGCCCCCCCAGATGACCCCTGACCTCATCTACTCCCCCCATCATCACTCCGTCTCCCCCCACCATCACGGGAGCAATGTCTTCCACCACCAGCACAGCATCGCTGTGTCGCACTTCCAGCACTGATCACCACCGACCACCAGGGGGTGCTGAAGAGAAGCGGGAGAGGTTTACTGACCTGGATATAGTGGGTGAAGAGAGCCACTTGAACTAGCCTCGCTAAACCAGGTCAAGAGGCTACACTTGAACAAGATGAAGttaatgaatgttttttttttgtttcaacGGGAACAGACGGCACTCATGAATGATGTCTTTGCATCAGATCAACAATTTTCTGATATTAAAAGATGACAAAGGCTTcttttacacaggcagccaaattctgatcttttgcccaattattgtcaaaatgtctgattggtcaaaaaaataattaatgacaaaagatcagaattgtgtAAAGGCACCTAGATGGTAATTTCAAATGTATGACTCGACCATAGAATCAAGACCTTGACTATGCCAATAGTCAACATCTACAGGACATAAAACCAGCATGATTGaatgattttttttattgtacTATTGACATTTATACAACAATGAAAGGATTCCGTGTTTACGTTTCAAGTAATTTATATTATATACTATTACAACGCTTTGCCGCCAGGACTGGGACGATACTAGTATCACGAAGATACTTGTTAGTATTGTGGCAAGGGaacaaaacacaaagcagatttaacttctttagaaAAACAGTCTTAATGTTGGAAACGAACATCACTATGTtatcatccagagtcacatgtaGTTAttttccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatATGTTCCATACAGCAGGTTTAGTACCAGGCTAT
>TU399547
aggctgggttactgtaaatcAGGCTGagttactgtaaagcaggctgagttactgtaaagcaggctgggttactgtaaagcaggctgggttactgtaaagcactttgtaaTACCTAGTGATGTAAAAGGGCCTTTAGTACATTTCATTGACTGATTGGTTCCTTTTGCTTCAGGAAAGTGAGAACCTGGAGAAGGAGAACGCGGCTCTGAGGAAGGAGGtgaagaaactcaaagaagaAGCCAAgtatctctcctctgtcctgactaCCCATGAGCCTCTCTGCACTGGCCTGCCCCCCCAGATGACCCCTGACCTCATCTACTCCCCCCATCATCACTCCGTCTCCCCCCACCATCACGGGAGCAATGTCTTCCACCACCAGCACAGCATCGCTGTGTCGCACTTCCAGCACTGATCACCACCGACCACCAGGGGGTGCTGAAGAGAAGCGGGAGAGGTTTACTGACCTGGATATAGTGGGTGAAGAGAGCCACTTGAACTAGCCTCGCTAAACCAGGTCAAGAGGCTACACTTGAACAAGATGAAGttaatgaatgttttttttttgtttcaacGGGAACAGACGGCACTCATGAATGATGTCTTTGCATCAGATCAACAATTTTCTGATATTAAAAGATGACAAAGGCTTcttttacacaggcagccaaattctgatcttttgcccaattattgtcaaaatgtctgattggtcaaaaaaataattaatgacaaaagatcagaattgtgtAAAGGCACCTAGATGGTAATTTCAAATGTATGACTCGACCATAGAATCAAGACCTTGACTATGCCAATAGTCAACATCTACAGGACATAAAACCAGCATGATTGaatgattttttttattgtacTATTGACATTTATACAACAATGAAAGGATTCCGTGTTTACGTTTCAAGTAATTTATATTATATACTATTACAACGCTTTGCCGCCAGGACTGGGACGATACTAGTATCACGAAGATACTTGTTAGTATTGTGGCAAGGGaacaaaacacaaagcagatttaacttctttagaaAAACAGTCTTAATGTTGGAAACGAACATCACTATGTtatcatccagagtcacatgtaGTTAttttccaggctatatcacaacatatgttccatacagcaggtttagtaccaggctatatcacaacatATGTTCCATACAGCAGGTTTAGTACCAGGCTAT

Function

NR:

description
basic leucine zipper transcriptional factor ATF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601107.2 False 2106 mRNA 0.43 3 41577166 41585497
TU399546 False 2749 TUCP 0.45 6 41577570 41586944
TU399547 True 1208 lncRNA 0.42 4 41577570 41579612

Neighbor

gene id symbol gene type direction distance location
LOC110522637 LOC106608296 coding downstream 3751 41529251 ~ 41573415 (-)
LOC110521118 LOC106571038 coding downstream 260853 41215322 ~ 41316313 (-)
LOC110522635 ylpm1 coding downstream 422996 41090335 ~ 41154170 (-)
LOC110522634 LOC106608299 coding downstream 506079 41055254 ~ 41071087 (-)
LOC110521112 LOC106608303 coding downstream 586738 40982406 ~ 40990428 (-)
LOC110522639 LOC106608295 coding upstream 8297 41593794 ~ 41628173 (-)
LOC110521119 LOC106608293 coding upstream 52530 41638027 ~ 41643171 (-)
zc3h14 LOC106608275 coding upstream 100547 41686044 ~ 41705837 (-)
LOC118964501 NA coding upstream 254752 41840249 ~ 41841777 (-)
LOC110522645 LOC106571024 coding upstream 349632 41935129 ~ 41989812 (-)
G352789 NA non-coding downstream 36793 41538260 ~ 41540373 (-)
G352731 NA non-coding downstream 43445 41530960 ~ 41533721 (-)
G352725 NA non-coding downstream 49369 41527465 ~ 41527797 (-)
G352786 NA non-coding downstream 60143 41516440 ~ 41517023 (-)
G352785 NA non-coding downstream 60783 41516134 ~ 41516383 (-)
G352817 NA non-coding upstream 24044 41609541 ~ 41610310 (-)
G352795 LOC106608292 non-coding upstream 79120 41664617 ~ 41675658 (-)
G352841 NA non-coding upstream 83855 41669352 ~ 41669800 (-)
G352845 LOC106608291 non-coding upstream 93831 41679328 ~ 41681947 (-)
G352723 NA other downstream 48066 41527968 ~ 41529100 (-)
G352537 NA other downstream 154414 41422247 ~ 41422752 (-)
G351896 NA other downstream 899052 40677466 ~ 40678114 (-)
G351886 NA other downstream 911688 40665092 ~ 40665478 (-)
G351054 NA other downstream 1858035 39718784 ~ 39719131 (-)
G352722 NA other upstream 4892 41543179 ~ 41686007 (-)
G352818 NA other upstream 26016 41611513 ~ 41611982 (-)
G352948 NA other upstream 256616 41842113 ~ 41842485 (-)
G353203 NA other upstream 564625 42150122 ~ 42150607 (-)
nme6 nme6 other upstream 705673 42291051 ~ 42298455 (-)

Expression


Co-expression Network