XLOC_022526 (tuba1c)


Basic Information

Item Value
gene id XLOC_022526
gene name tuba1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35690657 ~ 35694461 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044424
CCCTTCATCCTCCACACAGACTGCCTCAATCTTGGACAGTGGGTTCACAGTTACTCCCGACAATATAGAATTTTCCTCCTGCCTCCTGACATCCGTCTCATCGCTCCATCCCTTCCAGAATAATGCGTGAGTGCATCTCTATCCACGTTGGTCAGGCTGGAGTTCAGATCGGCAATGCCTGCTGGGAACTGTATTGTCTTGAGCATGGCATCCAGCCGGACGGGCAGATGCCCAGCGACAAAACCATCGGAGGTGGCGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAACACGTCCCCAGGGCTGTCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGGACATACCGTCAGCTGTTCCACCCTGAGCAGCTCATAACAGGAAAGGAAGATGCTGCTAATAACTATGCCCGTGGTCACTACACTATTGGAAAGGAAATCATTGACCTGGTGCTGGACAGGATTCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTTGGTGGTGGCACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTTGAGTTCTCCATCTACCCCGCTCCTCAGGTCTCCACCGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTTATGGTAGACAATGAGGCCATTTATGATATCTGCCGTAGAAACCTTGACATTGAGCGCCCTACTTACACCAACCTCAACAGGCTGATCAGTCAGATTGTGTCCTCCATCACAGCCTCCCTTAGGTTTGATGGTGCCCTCAATGTGGATCTCACTGAGTTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCTCTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCTGAAATCACCAATGCTTGCTTCGAGCCGGCCAATCAGATGGTCAAATGCGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGTGACGTGGTGCCCAAAGATGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACTGGTTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGTGATCTGGCTAAAGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTGGATCATAAGTTTGATCTGATGTACGCCAAGCGCGCCTTTGTGCACTGGTACGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTTGGTGTCGACTCCATCGAGGGTGAGGGAGAGGAAGAGGGCGAGGAGTACTAAAATATTCACTAAATGTCTAAAACTGAACACAGTAGACCGCTAATTTACACACGATAAACATGAGGTATCAAGTGTAAAGTCTACTCCTAAATGTTAGAGACACATTCTTGATCAGTTGTTGTGTTGTTATGGCCAGTATGCTTATTATTTGTGGAATTTGCTTGCCAAATTTGGAATAAATTGATGGTGATGTGCTACAATCTG
>TCONS_00044425
cTCTCTCACACTAtacaacattaaattaaattaataataaagcaaaataacGATGATTAAACCAAACATTCTTATAACGCGTCACCATAATACCGTGTGTTTTGATAGCTTGCATGAAAGGAATCATTTACAAACCTAAAGGACGACAACAGCTTTCAGTCTGAAGCACATCTTATCATGAATATCTAAAGGCACACAAGCGAGTAAAGGAATATCAGGTGTGCACTGCACTGATTTACATCGCTCTAATCCTCCTTCCTCGTTGGACGTCACGCTGGCTTTGGCTCCTCCCCTTCATCCTCCACACAGACTGCCTCAATCTTGGACAGTGGGTTCACAGTTACTCCCGACAATATAGAATTTTCCTCCTGCCTCCTGACATCCGTCTCATCGCTCCATCCCTTCCAGAATAATGCGTGAGTGCATCTCTATCCACGTTGGTCAGGCTGGAGTTCAGATCGGCAATGCCTGCTGGGAACTGTATTGTCTTGAGCATGGCATCCAGCCGGACGGGCAGATGCCCAGCGACAAAACCATCGGAGGTGGCGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAACACGTCCCCAGGGCTGTCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGGACATACCGTCAGCTGTTCCACCCTGAGCAGCTCATAACAGGAAAGGAAGATGCTGCTAATAACTATGCCCGTGGTCACTACACTATTGGAAAGGAAATCATTGACCTGGTGCTGGACAGGATTCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTTGGTGGTGGCACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTTGAGTTCTCCATCTACCCCGCTCCTCAGGTCTCCACCGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTTATGGTAGACAATGAGGCCATTTATGATATCTGCCGTAGAAACCTTGACATTGAGCGCCCTACTTACACCAACCTCAACAGGCTGATCAGTCAGATTGTGTCCTCCATCACAGCCTCCCTTAGGTTTGATGGTGCCCTCAATGTGGATCTCACTGAGTTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCTCTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCTGAAATCACCAATGCTTGCTTCGAGCCGGCCAATCAGATGGTCAAATGCGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGTGACGTGGTGCCCAAAGATGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACTGGTTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGTGATCTGGCTAAAGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTGGATCATAAGTTTGATCTGATGTACGCCAAGCGCGCCTTTGTGCACTGGTACGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGTACTAA

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061114-1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

Ensembl:

ensembl_id ENSDARG00000055216

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044424 False 1682 mRNA 0.52 4 35690657 35694171
TCONS_00044425 True 1720 mRNA 0.51 5 35690861 35694461

Neighbor

gene id symbol gene type direction distance location
XLOC_022525 NA coding downstream 21436 35663852 ~ 35669221 (-)
XLOC_022524 tmem18 coding downstream 41657 35642061 ~ 35649000 (-)
XLOC_022523 NA coding downstream 140995 35540360 ~ 35549662 (-)
XLOC_022522 fam110c coding downstream 199070 35486037 ~ 35491587 (-)
XLOC_022521 fbxo25 coding downstream 207347 35468834 ~ 35483310 (-)
XLOC_022527 jph2 coding upstream 27146 35721607 ~ 35756115 (-)
XLOC_022528 mfsd5 coding upstream 92481 35786942 ~ 35790260 (-)
XLOC_022529 nr1d4a coding upstream 101298 35795759 ~ 35821521 (-)
XLOC_022530 BX546466.1 coding upstream 170265 35864726 ~ 35864853 (-)
XLOC_022531 calcoco1a coding upstream 287378 35981839 ~ 36003441 (-)
XLOC_022518 NA non-coding downstream 487573 35200692 ~ 35203084 (-)
XLOC_022515 NA non-coding downstream 922506 34767321 ~ 34768151 (-)
XLOC_022513 CT025912.1 non-coding downstream 1721669 33968866 ~ 33968988 (-)
XLOC_022532 NA non-coding upstream 326335 36020796 ~ 36051826 (-)
XLOC_022533 BX005254.3 non-coding upstream 386964 36081425 ~ 36088234 (-)
XLOC_022534 BX005254.4 non-coding upstream 397885 36092346 ~ 36095368 (-)
XLOC_022535 NA non-coding upstream 415753 36110214 ~ 36278596 (-)

Expression


Co-expression Network