XLOC_022527 (jph2)


Basic Information

Item Value
gene id XLOC_022527
gene name jph2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35721607 ~ 35756115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044426
GGAGAGGGGAGAGGGGTTGAAAAGCCATGATCTATTCGATTAAATAGATCATTGTAAACAGAAAGCAACAAGATTatgtaactaaaaacaaaaagctAAAAAACAATCCTCCCTCTCCTAAGTCACTTCAACTACAAGACGTTTGATTCAGCATTTAAGGATATAGCCTATACAAAATCAGCAAATGATGAGCGACGACTCTCCAAGTCAGCGCGAGGAAAAAAGGATCGGCTCTCTCCGGTTTACGCATGGATTTAACAGCGCCCGGTAGAGGTTAATCGgtaaattatagtttttttaagTTTGAGAGTTTCGGAAGTTATTGGTGATTGCAGTGAGAAGTGATGAGCGGAGGTCGCTTTGAGTTTGATGATGGCGGAGCTTATTGTGGAGGCTGGGAGGGAGGAAAAGCGCACGGACACGGGATCTGCACCGGACCCAAAGGACAAGGAGAGTTCTCCGGCTCTTGGAATTACGGGTTCGAGGTGGTCGGAGTCTACACATGGCCGAGTGGAAACACGTATGAGGGCTATTGGTCCCAGGGGAAGCGTCACGGTTTAGGTGTGGAGACCAAGGGTCACTGGATCTACAAGGGAGAGTGGACGCACGGCTTCAAAGGCAGATACGGGACGCGCATCAGTCAGGGAAGTGGCGCCAAGTACGAGGGCACTTGGAATAACGGACTGCAAGATGGTTACGGCACCGAGACCTACGCTGATGGCGGTACCTTCCAGGGCCAGTTCACAGGTGGCATGCGGCACGGCTATGGAGTACGTCAAAGCGTTCCCTATGGTATGGCAGCAGTGGTGCATTCTCCCCTGCGCAACTCTCTTAGCTCCCTACGTAGTGAACACAGCAATGGCACACTCCTCCAGCAGGACGTCCCGGTCATCACCACCACCAATGCCTCAGGCCAGGAGACTCCAGTCAATTTACCCATGCCTCTGGGGCCATCCCGTGGTGGCTTTGCCCTCACCCTGCAAGTGGACCCAGATGCGGTCAAGCCCAAGAAAAGTGGTCTCTTCCGCCGCGGCTCATTTCTTGGCAAGCTAAAAAAGTCTGATTCCCGCACGTCTCTCTCCAGCCAGAAGAGCAAGATCAGCTTTTTGCGGACTGAGTCAGCATTGAGTTCTGCTGCCAGTGATGCAAACTCCACCATCAGCCTGGGCGAGAGCGAGGGTGAAGGCGAAGGTCATAACTTTCCCCCCGTAGAGGCAGACATTGATGCCACCACCACTGAGGTCTACATGGGAGAGTGGAAAAATGACAAGCGTTCAGGGTACGGGATCAGCGAACGCTCTAGTGGGCTTAAATATGAGGGTGAGTGGCTCAATAACCAGCGCCACGGTTATGGGTGCACCACTTTCCCAGAGGGGGGAAAAGAAGAAGGCAAGTATGTCAACAACATGCTCGTGAAGTCTGTGAAGAAGAAGATGATACAGCTGAAGGGCACAAAAATTAAACAGAAAGTGGAGCGCAGTTTGGAAGGGGCACAGAGAGCAGCCGCTATTGCGAAACAGAAGGCTGAAATCGCCAACTCAAGAACGGCCCATGCCAAAAGTAAAGGAGACGCTGCAGAACAGGCTGCTGTAGCCGCTAATAATGAGTCCAGTATCGCTCGAGTGGTTGCCAGAGAGCTCTCTCCCTCTTTCCATCAACCAGGTCCTGAGTATATTAAAAAGCGAGCCTTGCAGGAGGTTGCAGAGAGCAATGAGAACATGGAAACAGGCATTCACGAGCCCTTGTTGGCTGAGGACTCCCTGCCAACACCTCCGGAAAGCCCATTCATGCATGAGATGGAAGGTCTGAGACCAAGCTCCACTCCTGCACGCACCCCCTCACCCACCCTAGTCATTGTCCCTCAAGCACCAAGCAAGGATGATCCTCACCTCTTGAGCCCTGGGAGCTGGAATGGAGACAAGATCAGTAGGGGCAGTGCTAGTAAAAGCAGCAGTAGAGCAGGTAGTCGGCCAAATAGTAGACCCATCACTCCTGCTGCTGCTCCCACTCCAGATGCTGCTCCAGAAGAACACTCTGCCCCAAGTAGCAAGGTCCCATCTCGCACCCCTAGCCGCCAGAGTGCCAAAGTGGAGCAGGGTTCAGACATGGAAATCAAAGCTCTGCAGAAAACGGACATAGAGTCAAAAGTGGCAGAACCTGCCCCTGTTGCTAAACCAGTAAGAACCAACCTCATCCTTCCCAATGATGAAGAAGAACCACCACGTCCTGCACCCAAGCTTTCGCCCAAAGCAGCCACACCTGAGCCAAAGGCAGCAGAAGTCAAGCATAGAGCTGACACAAGGCAGCCCATAAATGAGCGCCCTGCTTCTATGACAGAAAGCAAGCCTGAGTATAGGACAGACGTCAGGGAGGAGAAGAAATTTATCAACAAAGTTGAGCCTAAACCTTCACCGAAACGAGAACCAAGCCCTGCCCCAAAAGTCACACCAAAGCCTGAACCCAAGACAGTGCCTAAACCAGAACCAAAACCTGTGGTCATGCCGGTTGCAAAACCTGTTGCCAAGGTGGAGGCCAAAACTGAAACAAGGCAGAGGTCTATTATGAAAGCCCCGAGTGAAATGACACAACCATCTATGGAGCTAGAAGAGGGGCCAAACACGATTATGATCTGCATGGTTATATTCCTGAACATCGGTTTGGCGATTCTTTTCGTTCACATCTTGTCTTGAGGTGACAAAATCTAAGCCAAAACCATCCAGGTGAAAGAAACTACCATGGGGAGCTGTGAGGAAGCACTGCGCTCCATTAACGGCTCTGTTGTTGCGTTATCCAGTTTCAGAACAGCCCTCCTGAGCTACTCTGAAGATGGTTGCCATCTGTAATTGGACCGAGTGCTCCCAAATGATCAGTGTGCCTCAGTGCCTGAACATTACAGAATGAAGCATTTCTGCACATTTGCTTTGTTTCTAAAAGGTACTGCTGCATTTAACAGGTCTGTTAAAGTCTATTGCAGCTGGAGCTGAATCGTCTATAATAAGGGCTAATTCACGTTGTGCACGTCACGTTCTATAAAGCAAAACATGTCACTTGGCATGTAACATTCATCTCTGGAGAATAAATAAGTAGTTGTGATGGTAAAAAAAA

Function

symbol description
jph2 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 17. Orthologous to human JPH2 (junctophilin 2).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030314 junctional membrane complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9848 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 17. Orthologous to human JPH2 (junctophilin 2).

Ensembl:

ensembl_id ENSDARG00000028625

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044426 True 3105 mRNA 0.50 6 35721607 35756115

Neighbor

gene id symbol gene type direction distance location
XLOC_022526 tuba1c coding downstream 27146 35690657 ~ 35694461 (-)
XLOC_022525 NA coding downstream 52386 35663852 ~ 35669221 (-)
XLOC_022524 tmem18 coding downstream 72607 35642061 ~ 35649000 (-)
XLOC_022523 NA coding downstream 171945 35540360 ~ 35549662 (-)
XLOC_022522 fam110c coding downstream 230020 35486037 ~ 35491587 (-)
XLOC_022528 mfsd5 coding upstream 30827 35786942 ~ 35790260 (-)
XLOC_022529 nr1d4a coding upstream 39644 35795759 ~ 35821521 (-)
XLOC_022530 BX546466.1 coding upstream 108611 35864726 ~ 35864853 (-)
XLOC_022531 calcoco1a coding upstream 225724 35981839 ~ 36003441 (-)
XLOC_022532 NA coding upstream 264681 36020796 ~ 36051826 (-)
XLOC_022518 NA non-coding downstream 518523 35200692 ~ 35203084 (-)
XLOC_022515 NA non-coding downstream 953456 34767321 ~ 34768151 (-)
XLOC_022513 CT025912.1 non-coding downstream 1752619 33968866 ~ 33968988 (-)
XLOC_022533 BX005254.3 non-coding upstream 325310 36081425 ~ 36088234 (-)
XLOC_022534 BX005254.4 non-coding upstream 336231 36092346 ~ 36095368 (-)
XLOC_022535 NA non-coding upstream 354099 36110214 ~ 36278596 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02526729_02544932 JPH2 coding CI01000001 null 2526729 ~ 2544986 (+)