XLOC_022528 (mfsd5)


Basic Information

Item Value
gene id XLOC_022528
gene name mfsd5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35786942 ~ 35790260 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044427
TTTTGCGTCATGACGCCTGAGTAACCCGGAAACACACGCGGATGTTGTAGAACATATATTGCAGGCATTTAGATGAAAAAAGCGTCTGAATTCATGGCGTAGAAAAGAAGTCAAGCTGACAGTTGCTCATGATGAGTCCAGAAGTGAGTTTATCCAACAGTCATGTGTCACGTGATGATATGAACCATTAATTTCAATGCCCCAAAAGCTGTAGGAGGATGTTGATCTAGGATTTCTTCTGATTCCTCCACTCACCTTCAGACAGATTTGTGCCCATCATGTTTGTGACGGCATACCTAGCATTTATAGTCCTAGCAGGACTGTGTGTGGCTTTAGAGATCACAGCCCGGCGTCTCACCTTATCCCAGGCCACACAGACAGCAGTCGCCAATCCGGCTTTCCAGCGTTTCCAGAAGCTCTTTCTGAAGGCGTATCTCCTGGCTCTCTGGGCAGACTGGCTACAAGGGCCTTACCTTTACAAACTATACCGACATTACAACTTCTTGGAGTCACAGATTGCCATCCTATACGTCTGCGGTCTGGCTTCTTGTGTGCTGTTTGCCCCGGTGGCCGGATGGCTGCCACAGTTTCTCGGCCGAAGACAGACGTGCCTCCTCTTCTGCTTGGCTTATTCAGTGTGTTGCATCACCAAACTCTCACAAGACTATTTTATGCTCATTCTAGGACGTGTATTAGGCGGCCTGTCCACTTCTCTGCTAACAACCACCTTTGAGGCCTGGTATGTGCACGGTCACGTTGACATCCATGACTTCCCCAAAGAATGGATCCCTGTTACGTTTGGTAAAGTCGCCAATTGGAATTATGGACTTGCAGTTGGTGCTGGACTAGTGGCGAATTTGTTCGCAGAATGGCTTGGGTTGGGACCGGTCGCTCCATTTCTGTTGGCTATCCCGAGCCTTGCTGCTTGCGCCTGGTTTGTGCTTTCCGAATGGGGTCAGGAGGACAAACAAGAAGGCATGAATGGAGACAAAAACGCCCCCCTTCTTAACTCCCTAAACACCCCCAAGTTGCAATTGTCAGCACGTGCCCGTTTCTGGCGTAGCTGTGTGGATGGCCTTCGATGCCTGCTCTCGGACCGCCGTGTTATGCTTTTAGGAGGCGTTCAGGCACTTTTTGAAAGCgtgctgtatatttttgtattcctGTGGACTCCTGTTTTGGATCCTCATGGCCCACCTTTAGGAATCGTATTCTCCAGTTTGATGGCGGCCACCATGGCGGGCTCCACACTTTTCCGATTGGCCACATCAGCCCCGTATCGACTCCAACCCGGTCATCTGCTCTGCCTAGCCATTCTTCTAGCGTTCTTCTCCTTCTTCATGCTGACGTTCTCCACCGTGCCTGGCCAGCCCCGGCCCAGGGAATCTCTGCTCGCTTTCCTTCTGCTGGAGCTGGCTTGTGGGCTTTATTTCCCAGCGGTGAGTTTCCTCCAGGGTCGTGTGGTTCCCGTGGAGCGCAGAGCTGCAGTTTTGGCTTGGTTTCGTTTGCCTCTGCACCTCCTGGCCTGTCTGGGGCTGCTGGCGCTTCACGGGGAGGTTTCAGGGTCCGGTGCGGGAGAGGCTGGCAGCGGCACCAGGCACATGTTTGCAGGCTGTGCTGGGATGATGCTGGCCGCTCTGCTCGCCGTTATCAGCCTTTTCACTGTGGGCAGGAATGATGCCGACCTGAGATTAGAGGGCCCCAAACTGGAAGGAGAAATCTGAGTTGGACAGTGGATTATATATGGACTGTTGAAGTGAATCTATTCAATAGGatagatcagtgtttcccaaccctgttcctgaaggcacaccaagacattttcaacctcttcctattcaaacacacctgaatcaactcatcagaacattagaagaaaacctgaaatgaatgggtcagataaggcaGACAGCCAAAATATGAACTGTTGGGTTgcttccaggaacagggttgggaaacactgggaTAGACCTTTGAGATGAAACATCTCATTTTCAACGGCGTCCCTATGAAgtacataaaagaaaaaagaaaaaaaaagagtacaatACATCAAAACAAACAGAGATTGTGGACTGTGGTTTTATATACTTTGTTTCTTTCCTCATGCATTCTGTCTTGgttaaacaattgtatttatgGGTAAATGCGAATGTTAATAGAACCAATAAACTCAAAATCGGATGTATTTCTAAAATGTGTTTAGGAATTAAATTGGGGCGCGATATGTTCAACAAGTCAGTGAGCCGGTGAGGgatcacaaacacacattgtGAAATgcgtagggttttttttttatccatacgGCGTGCGGtataaaattccattaaaactacactcttctagcagttcatactctcatccaatatcttgttttgaCTTggggggggcatgcatgaaatgctcctgaatgaaagtaaaaaagtggcaaactgcagttaaagtcgacaaattaaaaataaaacacttgagattacatgaaactccagaggaaatgttgGATAGTGTGGTGAAGCAATGACATAAATCAAactgtgctataacatgtaaaacagaatcatgaaaggaacattcaaaacacaactaatgtaaacaccttaatcattgTATTATCCTATTTAGATTAAGACAAATATTTTGATTACTgatgcaaacatttattttaacaccaAGCCGATACCCTGGAGTAGATTCCCTATACAGTATGTATTGAACTGTGGCTACTGTTTGAGCTACAATTAAAGCACAGTGTGATTATTAAAACAATAGGCTATGCATTAGTAATAAATGCAATAAGACAGTTTTTACATCCATCTCATGCTGCACACAGACCATACGGACAGGTTAAGGTAAGCATTTTCATTTATTGAAATAGATGGCAACTGAACAAATTAAGGCTCATGAACAAACATCTTAGaaagcactgtaaataaatgcatatttgaaaaatataaaaataaaaattacaaaataaa
>TCONS_00044428
GCGTCATGACGCCTGAGTAACCCGGAAACACACGCGGATGTTGTAGAACATATATTGCAGGCATTTAGATGAAAAAAGCGTCTGAATTCATGGCGTAGAAAAGAAGTCAAGCTGACAGTTGCTCATGATGAGTCCAGAAATGAACCATTAATTTCAATGCCCCAAAAGCTGTAGGAGGATGTTGATCTAGGATTTCTTCTGATTCCTCCACTCACCTTCAGACAGATTTGTGCCCATCATGTTTGTGACGGCATACCTAGCATTTATAGTCCTAGCAGGACTGTGTGTGGCTTTAGAGATCACAGCCCGGCGTCTCACCTTATCCCAGGCCACACAGACAGCAGTCGCCAATCCGGCTTTCCAGCGTTTCCAGAAGCTCTTTCTGAAGGCGTATCTCCTGGCTCTCTGGGCAGACTGGCTACAAGGGCCTTACCTTTACAAACTATACCGACATTACAACTTCTTGGAGTCACAGATTGCCATCCTATACGTCTGCGGTCTGGCTTCTTGTGTGCTGTTTGCCCCGGTGGCCGGATGGCTGCCACAGTTTCTCGGCCGAAGACAGACGTGCCTCCTCTTCTGCTTGGCTTATTCAGTGTGTTGCATCACCAAACTCTCACAAGACTATTTTATGCTCATTCTAGGACGTGTATTAGGCGGCCTGTCCACTTCTCTGCTAACAACCACCTTTGAGGCCTGGTATGTGCACGGTCACGTTGACATCCATGACTTCCCCAAAGAATGGATCCCTGTTACGTTTGGTAAAGTCGCCAATTGGAATTATGGACTTGCAGTTGGTGCTGGACTAGTGGCGAATTTGTTCGCAGAATGGCTTGG
>TCONS_00044429
CCGGAAACACACGCGGATGTTGTAGAACATATATTGCAGGCATTTAGATGAAAAAAGCGTCTGAATTCATGGCGTAGAAAAGGTATTTAATAATCCCAAATCAGCGGACAGTTTCTAAATTCCTTAGAAAAATGTTAAGAGTACGAAGTCAAGCTGACAGTTGCTCATGATGAGTCCAGAAATGAACCATTAATTTCAATGCCCCAAAAGCTGTAGGAGGATGTTGATCTAGGATTTCTTCTGATTCCTCCACTCACCTTCAGACAGATTTGTGCCCATCATGTTTGTGACGGCATACCTAGCATTTATAGTCCTAGCAGGACTGTGTGTGGCTTTAGAGATCACAGCCCGGCGTCTCACCTTATCCCAGGCCACACAGACAGCAGTCGCCAATCCGGCTTTCCAGCGTTTCCAGAAGCTCTTTCTGAAGGCGTATCTCCTGGCTCTCTGGGCAGACTGGCTACAAGGGCCTTACCTTTACAAACTATACCGACATTACAACTTCTTGGAGTCACAGATTGCCATCCTATACGTCTGCGGTCTGGCTTCTTGTGTGCTGTTTGCCCCGGTGGCCGGATGGCTGCCACAGTTTCTCGGCCGAAGACAGACGTGCCTCCTCTTCTGCTTGGCTTATTCAGTGTGTTGCATCACCAAACTCTCACAAGACTATTTTATGCTCATTCTAGGACGTGTATTAGGCGGCCTGTCCACTTCTCTGCTAACAACCACCTTTGAG

Function

symbol description
mfsd5 Predicted to enable molybdate ion transmembrane transporter activity. Predicted to act upstream of or within molybdate ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human MFSD5 (major facilitator superfamily domain containing 5).

GO:

id name namespace
GO:0015689 molybdate ion transport biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015098 molybdate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040718-468 Predicted to enable molybdate ion transmembrane transporter activity. Predicted to act upstream of or within molybdate ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human MFSD5 (major facilitator superfamily domain containing 5).

Ensembl:

ensembl_id ENSDARG00000015997

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044427 False 2975 mRNA 0.45 3 35786942 35790260
TCONS_00044428 False 837 mRNA 0.49 3 35789040 35790256
TCONS_00044429 True 736 mRNA 0.47 3 35789183 35790235

Neighbor

gene id symbol gene type direction distance location
XLOC_022527 jph2 coding downstream 30827 35721607 ~ 35756115 (-)
XLOC_022526 tuba1c coding downstream 92481 35690657 ~ 35694461 (-)
XLOC_022525 NA coding downstream 117721 35663852 ~ 35669221 (-)
XLOC_022524 tmem18 coding downstream 137942 35642061 ~ 35649000 (-)
XLOC_022523 NA coding downstream 237280 35540360 ~ 35549662 (-)
XLOC_022529 nr1d4a coding upstream 5499 35795759 ~ 35821521 (-)
XLOC_022530 BX546466.1 coding upstream 74466 35864726 ~ 35864853 (-)
XLOC_022531 calcoco1a coding upstream 191579 35981839 ~ 36003441 (-)
XLOC_022532 NA coding upstream 230536 36020796 ~ 36051826 (-)
XLOC_022533 BX005254.3 coding upstream 291165 36081425 ~ 36088234 (-)
XLOC_022518 NA non-coding downstream 583858 35200692 ~ 35203084 (-)
XLOC_022515 NA non-coding downstream 1018791 34767321 ~ 34768151 (-)
XLOC_022513 CT025912.1 non-coding downstream 1817954 33968866 ~ 33968988 (-)
XLOC_022534 BX005254.4 non-coding upstream 302086 36092346 ~ 36095368 (-)
XLOC_022535 NA non-coding upstream 319954 36110214 ~ 36278596 (-)

Expression


Co-expression Network