XLOC_022531 (calcoco1a)


Basic Information

Item Value
gene id XLOC_022531
gene name calcoco1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35981839 ~ 36003441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044433
gcttctgtttttgttattgttgtgagAGGTTCGTGGTACAGCTCATCTCGGCAAATGTGTCAGTGTAAATTAGACTTGTCATCAGTCTCATACACGCTTTCTCTTTTATGACAGAACATCGTTTTCAAGAGGATATTGTTTTGATTACCTAAGCTAAATCGGaaaacacCTCGGGTGCATCACTATTCTGTTGCCATGGAGAAGACATGGAGGGTGGAGTTTCGTAATGTTGGAAGTTGCTACTTTCCACAGAGCAGAGTGGACTGTCACTACACCATCAACCCACAGCACACATGGGCCAGTAATGACTGGATTGGATTATTTAAGGTTGGCTGGTCATCAGTCAAGGAGTACCATACATTTGTTTGGGCAGTAGCTCCATCCAGCTACAAAGAAGGGACCTCTGTCAACTGCTGTGTTAATTTCCAAGCTTCTTACCTACCAGGGCCTAGTGCTCAGCAGTACCAGTTTGTGTATGTGGATGGAAAGGGAGAGATTTGTTCTTGCAGCGCTGCCTTTACCTTCTCAGCACCAAAGCCCCTGGAAGAGCTGGTGACCCTGGAGGAGGAGGGTCAAGGAGAGGAAGTGGGCGAGGACATGTTGCTGGTCATCCCTAGAGCTCAGCTACTGCAGAGTCGTCTTCAGGAGTGTTTAAAGGAGCGTGCAGAGCTGCTCCAGGCTCTAGAAGCTGCAGACCAGAACGTGGAGAGGGAGAAAGGCAGAAGGGAGAGAGACAGAGGGTCCTGGGAACACACACGCAAGGAGCTTGAAAGGAAGATCGACGATCTGAAGGAGGAAGTGAGAGAATATAGAGAGAAAGTGGAGGACATGAAGAAGAAGCAGAAGGAAGTTGAGGATTTAGGCGAGGCCCTGACAGAGGAGAAAAGAGCCCTGCTTGCTCAAAAAGAAGCGAATGAGCAGCGAATCAGAGAGCTTGAGGAGGACATCAAAATACTGACCCAGAGGGGCTTGGAGAGAGAGACTGACTTAGAAAGGATGAGGGAAAGGGCTAAAAAATCAGCAGCTCAGAAGagggaggatgaagatgaacacAAGAACCTGAAGTTAAAGATGGAGCAGACAGAGAAAGAGCTGCACAGTCTGTCAGCAGAGTTCCAGAGTCTGAGAAGCTCATTGGCCCAGAGAGACACACACGCCCTGCAGCTTAGAGACACCATCACCAccctcacacacaaactcaacagCGCTCACAGGAAGGAGGCAGCCAATGAATTGGCTTTGAATGAACTCCGAAGTGTTCAGGAGCGTCTGAATGTTAGTGAACACTGTGTGGAGACTCTGAGGGGAGAGCTGAGAGACATGGTTGCTCAGAGAGACAGTGCACATGCTGAGCTCCATCAGGCCCGTCTGCAGGCCGCACAGCTCACACTTCAGTTAGCAGATGCCagtctggctctgagagaaggcAGGGCCAACTGGGCACAGgagagagagacactgcagcagaATGCTGAGATTGACAAAGTGCGTCTGGAACGCCAAAAtgatgagatccagcagaaggAGGAGATGTTGCAGAAGGCAaggatggagagagagaaagcagtGGTGGAGCTGGGAAGAGAGAAAGATTGCAATCGGGAGCTAAAGGCAAGTCTCAGGGTGGCTCAGAAAGAAAAGGAACAGCTGCAAACAGAAATACAGgaagtGATGGAGTACAGCCGTCAGCTGGAGAGAAGGCTGGAGGTGCTGAGCGATTGTAAATGGAGTGAGACGGCCCTGCTGCAGAGCAGTCGTGCTGAAAGCCCACTGCTGTCTGATTCTGAGGATGAGAACCCGGAGGCCTTGCAGGACACACACTCTTCTGGGCCTCTGAATCACTATAGTCTGTGTGAGCAGCCCCAGTCTGACCTGCTGCTCCCAGCCACCCCACCACCCTCTCCCAGACATCCCTCCACAGTGGTCATCAGCCAGCCTGCACCCCTTTCATCTCCACACCAACCCAGTGCTCGCTCACACACTCACAGCTCTGAGTCGGAGGAAGAGTATGAGGCCGCTTTGTCAGGCGGGCACAGCTCTGGAGAGGAGACAGCTCTTCTCCTGCCTGACAACAGAGACACTACCCTCGGAGAGCTGGCTGAGAGCCCCCTGTGGTGAGAAGCAGAACTGCAGGAATGGATGGCCTTTGCAGCGTGGACGGCTTTGCATCAGCGCAACACCTGTTAAGAGTTTTGTATTAAGAAGCATTTGCGCTTTATATTATATTGACATGAGTATTTAAATATGCAATTTGCTTTACACTTTATATGCACTTAGAATATGCATAAGCTGTTAGACCTCTATTGTGGGTGGCACACGGTTTTACAGTAACTTGCACGGACGTGTTATTTTACACATATCAACTGACAAGCAGAAAGCGTCTGTAATGAAGCAGGTTGCATATGAAGAGAAAGAAttagtgtgtgtttctctctctctgtgtgtgtgcgtgtgtgtgttaaggTTATTTCAGTCTATCttttcttgtgttttatttgagtTTAGTCATAAGGCTTTTACTTCTGTAACACTATCATTAATCAGCATCAGCAATAATGTAAAGCACAATGATATCGAGATCCTTGCAGATTTTAGATTTAAGATTCGTTTGGGTGCTCTTCATTGTGTAGCTCTTGTCGTAGAAGTTTTTGGAATCTTTAGTTTGAAGAAAGATGTGTGAATATGTGCAATGGAGTACACCAGCGACTGATTGTCCCGTTATTATGTAAGAGTAAAGAACGGCACTTTTGATTCCTTTCAGGAAGTTTACCCAATCTCATGCACAAGACTTTCTTTGGAGGAAATCCACTTAAGCATGGATGATGTGGTCATTAAGAAGAGTTTAAGTAGTCACATTGTAGTCATAATATCTAATTTAATGCTTTGACTTAAGTTTCATGCATTGTATCGAAACATTaagaattgaattattatttgtatGCAAAACATACCAAGACAGACGGCTCAAGCACTTGGGTGTTCCTCTTGGTGTTGAAGATACACACTAGAAAGTTTTCAGAATGGACTTTGAATTGAACTGCTTTAAATTGTGCCTGACGAAATTCAAGGACTCTTATATTTAATTCAACTTAATGTGTGATGGCTTAATGGTGCATCACGTGGATCATGTGGTGAACATTATTTAGCTGTGCTTAGACTTTGCTGAAGCTCATTACCTGAGGAAAAATTCATAAATTTCCAGACACAgtgattacattttaattacattcaCAGGGAgaatattttaatgcatatattaAAAAGTGAAACAACAAAGGGGATATTATGAAAAGGCATTATGCATTAAAACATAtacctgttttaaaa
>TCONS_00044434
GCTGTACTGTTACCATGACGTCTCATGTCTCACGTCGACCTTCAAAGCATCTTCCTTACAGATGGGGATTTTAGTTTTTCTGAGAGTCTGAGCAATGATTCAAAACCAGTCAAGGCACTTCATTTCCCATGATGCAGCGGTTCTCTCCGAAGCACCCAtgcttctgtttttgttattgttgtgagAGAACATCGTTTTCAAGAGGATATTGTTTTGATTACCTAAGCTAAATCGGaaaacacCTCGGGTGCATCACTATTCTGTTGCCATGGAGAAGACATGGAGGGTGGAGTTTCGTAATGTTGGAAGTTGCTACTTTCCACAGAGCAGAGTGGACTGTCACTACACCATCAACCCACAGCACACATGGGCCAGTAATGACTGGATTGGATTATTTAAGGTTGGCTGGTCATCAGTCAAGGAGTACCATACATTTGTTTGGGCAGTAGCTCCATCCAGCTACAAAGAAGGGACCTCTGTCAACTGCTGTGTTAATTTCCAAGCTTCTTACCTACCAGGGCCTAGTGCTCAGCAGTACCAGTTTGTGTATGTGGATGGAAAGGGAGAGATTTGTTCTTGCAGCGCTGCCTTTACCTTCTCAGCACCAAAGCCCCTGGAAGAGCTGGTGACCCTGGAGGAGGAGGGTCAAGGAGAGGAAGTGGGCGAGGACATGTTGCTGGTCATCCCTAGAGCTCAGCTACTGCAGAGTCGTCTTCAGGAGTGTTTAAAGGAGCGTGCAGAGCTGCTCCAGGCTCTAGAAGCTGCAGACCAGAACGTGGAGAGGGAGAAAGGCAGAAGGGAGAGAGACAGAGGGTCCTGGGAACACACACGCAAGGAGCTTGAAAGGAAGATCGACGATCTGAAGGAGGAAGTGAGAGAATATAGAGAGAAAGTGGAGGACATGAAGAAGAAGCAGAAGGAAGTTGAGGATTTAGGCGAGGCCCTGACAGAGGAGAAAAGAGCCCTGCTTGCTCAAAAAGAAGCGAATGAGCAGCGAATCAGAGAGCTTGAGGAGGACATCAAAATACTGACCCAGAGGGGCTTGGAGAGAGAGACTGACTTAGAAAGGATGAGGGAAAGGGCTAAAAAATCAGCAGCTCAGAAGagggaggatgaagatgaacacAAGAACCTGAAGTTAAAGATGGAGCAGACAGAGAAAGAGCTGCACAGTCTGTCAGCAGAGTTCCAGAGTCTGAGAAGCTCATTGGCCCAGAGAGACACACACGCCCTGCAGCTTAGAGACACCATCACCAccctcacacacaaactcaacagCGCTCACAGGAAGGAGGCAGCCAATGAATTGGCTTTGAATGAACTCCGAAGTGTTCAGGAGCGTCTGAATGTTAGTGAACACTGTGTGGAGACTCTGAGGGGAGAGCTGAGAGACATGGTTGCTCAGAGAGACAGTGCACATGCTGAGCTCCATCAGGCCCGTCTGCAGGCCGCACAGCTCACACTTCAGTTAGCAGATGCCagtctggctctgagagaaggcAGGGCCAACTGGGCACAGgagagagagacactgcagcagaATGCTGAGATTGACAAAGTGCGTCTGGAACGCCAAAAtgatgagatccagcagaaggAGGAGATGTTGCAGAAGGCAaggatggagagagagaaagcagtGGTGGAGCTGGGAAGAGAGAAAGATTGCAATCGGGTTCAGCTAAGTGAGACTCGGCGTGAGCTTCAGGAGCTAAAGGCAAGTCTCAGGGTGGCTCAGAAAGAAAAGGAACAGCTGCAAACAGAAATACAGgaagtGATGGAGTACAGCCGTCAGCTGGAGAGAAGGCTGGAGGTGCTGAGCGATTGTAAATGGAGTGAGACGGCCCTGCTGCAGAGCAGTCGTGCTGAAAGCCCACTGCTGTCTGATTCTGAGGATGAGAACCCGGAGGCCTTGCAGGACACACACTCTTCTGGGCCTCTGAATCACTATAGTCTGTGTGAGCAGCCCCAGTCTGACCTGCTGCTCCCAGCCACCCCACCACCCTCTCCCAGACATCCCTCCACAGTGGTCATCAGCCAGCCTGCACCCCTTTCATCTCCACACCAACCCAGTGCTCGCTCACACACTCACAGCTCTGAGTCGGAGGAAGAGTATGAGGCCGCTTTGTCAGGCGGGCACAGCTCTGGAGAGGAGACAGCTCTTCTCCTGCCTGACAACAGAGACACTACCCTCGGAGAGCTGGCTGAGAGCCCCCTGTGGTGA
>TCONS_00044435
TGTGGATGGAAAGGGAGAGATTTGTTCTTGCAGCGCTGCCTTTACCTTCTCAGCACCAAAGCCCCTGGAAGAGCTGGTGACCCTGGAGGAGGAGGGTCAAGGAGAGGAAGTGGGCGAGGACATGTTGCTGGTCATCCCTAGAGCTCAGCTACTGCAGCAAAACATAATCAAAGCATTTTGACGAGTCAAGATCTGAGTAAATTGGATGGTATGCAAACAATCTGGATATTCAGCGTGGTTGATTCAAGAGAAATGGGCTCAATTAAACTGACTAGCCAAAATTGTTATGGAAAGGCAACTGGCTTAGAGTCTCTGCAGTTGCTTGTGGGTTGCAGCATTGGTGAAAATTTACAACAGTGGCCTGAGGGGGAACAATCCACAAACCGGCAACAGGGGTTTGGGCTTTCTGTGCATGAAGGCATTGACGGGTGAGCCATCTGTTCTAAACCGACAGAAGATCTACTGTGGCACAAAGCACACAAATTGGTCATAGAATGTTAATGATGCTTATGAGTGAATTGTGTCTGAACAGTATCTAAAGCGGTGTAGCCACAGACCAAAGGGTATGTGTTGACCCGTCTACCACCAACACTAGATTATCTGAAGAAAATGATGAAGAG

Function

symbol description
calcoco1a Predicted to be located in cytoplasm and nucleus. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6911 Predicted to be located in cytoplasm and nucleus. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1).

Ensembl:

ensembl_id ENSDARG00000036695

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044433 False 3327 mRNA 0.46 15 35981839 36003282
TCONS_00044434 False 2224 mRNA 0.52 16 35983048 36003441
TCONS_00044435 True 620 processed_transcript 0.46 2 35998547 35999332

Neighbor

gene id symbol gene type direction distance location
XLOC_022530 BX546466.1 coding downstream 116986 35864726 ~ 35864853 (-)
XLOC_022529 nr1d4a coding downstream 160318 35795759 ~ 35821521 (-)
XLOC_022528 mfsd5 coding downstream 191579 35786942 ~ 35790260 (-)
XLOC_022527 jph2 coding downstream 225724 35721607 ~ 35756115 (-)
XLOC_022526 tuba1c coding downstream 287378 35690657 ~ 35694461 (-)
XLOC_022532 NA coding upstream 17355 36020796 ~ 36051826 (-)
XLOC_022533 BX005254.3 coding upstream 77984 36081425 ~ 36088234 (-)
XLOC_022534 BX005254.4 coding upstream 88905 36092346 ~ 36095368 (-)
XLOC_022535 NA coding upstream 106773 36110214 ~ 36278596 (-)
XLOC_022536 cbx5 coding upstream 293780 36297221 ~ 36306356 (-)
XLOC_022525 NA non-coding downstream 312618 35663852 ~ 35669221 (-)
XLOC_022523 NA non-coding downstream 432177 35540360 ~ 35549662 (-)
XLOC_022518 NA non-coding downstream 778755 35200692 ~ 35203084 (-)
XLOC_022515 NA non-coding downstream 1213688 34767321 ~ 34768151 (-)
XLOC_022538 BX571773.1 non-coding upstream 318569 36322010 ~ 36322124 (-)

Expression


Co-expression Network