XLOC_022536 (cbx5)


Basic Information

Item Value
gene id XLOC_022536
gene name cbx5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36297221 ~ 36306356 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044447
tcagaaagCTGAAGAATCTTTTTTATGAAACACAAAAAGTGGTCTTTATTGTATGTGTGACGCGTGCGCATCCCATTGTATGCGCCGAGGCCGTTTTTGGCGCGAGAGCTGCTCGCTGAGGCGCACGCTGATTGGCTGAACGCGCCGCTGGACGGATGCATGCGCGAGAGGCAGCAAACTCTGTGTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAAGAGTGCCACAGCGGTGTAAAGGGCAGAGGTTTGGGAAAGACATACAGTCCTCCAAAACCTTGCACCGATGACACTCTCATAGCCAACTTTTAACGGACCATTTAGAAAACGAAAGGCCAGCGAGTATCGGAGGTTTACTGCCCACCACAACAACCTCCGTCCACCTTCACCAAAACACATCTCTCATCAGACAGAGCGAACGGTGGCTGCGGCAGAGCGGTGGAATGTGGAAAACTCTTACTTCTCTTACTCTCTCTGATCTTCCTTCTGTTTTGTCATGATTTGTGTATTCGTGCCCCTACAACTATGTTCTTATGATGTGTTGTGTGCTAGTGTAGATGTGAAACGATGAAAAAAAACCCGTACATGTCcaacttttaacttttattcgTTCAGATTTCACAGTATTGCGGAACATGACTGAATGAAATCAGTCGAGTTTGCGTTCGTTAACATCTGCAATGCTGGATGAAAAAGCGACGCCAtcgttttttatttacaaaactgCTTCTTAATTGATGCCGTTCgcattttgcttattttttttcccccaatcaAGTAGATTTAAGTTTGCTTTATTgcaattttaactttaaaaaaagtcCTTTGTGGGCCAAATTATCATACGATTTTTATTgggcttgtttgttttttatcagtACATCTACCTAAATGATCTATATCTTATTACCCAGACTAAAATCAGGACATTTGGATAAATTTTAACATCTGtgtaaaaatatcttttaaaatgtcAACCTTGGCCCTTTTTATCCGCTATTCGATCTTATCACTGTTGCTTGCAGGAGGACAGACAATCGTCATCATGTAAGTGTGTAAAGGGACATTTCTATCTATTTCTACACACTTTTCTTCCATGATTTTATTTTCCCTCCATAAAACGGAAGCGATTATACTCCCTCTTGTGGCTGATTTGCTGAACACATTCCCTGTTTGACCTCATTCACACATAGTTCAAGCATTGTCGGGttcttatattacttttttaacctAGAGTTGATTCAATAAAATGGTGTTTATCAAGGTCACATGACTACACTAGAGTTTTGTGCGCTTCTTCGCAAAGACACTGAACAAAAGCTACTGATATCGACAGCTGTAAAAGAGTGAGAATGGTTTAGCTGGAGATGGAATAGTGTGTATCGGGGGggatgtttttaaacatttatacaggGTTAAACATGATGTTGTAGGtacatttctattatttttttgtatgcttTTATAATCCTGCCATGATCATTTATACATGTGACTCATTTCTAGCTGatagaagtttttaaaatgtgcaacAATTATGTCTATTTGCTATTTTAAGTTCACAGTCGTTTTTAATGTACTGTAACAAGCTGTAGTAAATCTAGTTTCCAACACTTCAGTTTTTGGAAACTCCAAACCCTGGGTTTTGGACTCAAGTCATGCACAATACATTTCATTGTAGTGCTGAGATTATGCAAGTTTTACTTTGTGCAATGTTTGTGGGGAAAACCAGTTTTTAACAGCTTATAACGATTGATCAGATAGCAGTTGACTGAATCTGCACATTTTGcgctataaaaaaaaacaacagtgctGATGTGAACCAGCAGATGTCATAATAGAGCAACTCTTGTCTGTTTGTCTCAGctggacgaaaaaaaaaaaaaaagtgtatggctTTAAGAGTTGCACAGTGATTTTGACCAAATCCAGCAGATTAAAATCTATACTGTTGgacacatttgtattttaaaacatttgcatCCGCATGCAAAGTCAGTTTGCTTATATTTAGGTTCTCATTTGTGCATATTTTCTCAATTATGCCATATTAGGACGTCACTTTCAGtagtatttattcagttttgtgCCAGAACATTTATATGAATGCCATACTTTTCTATTTTATTTGCGCTTTACAACGCATATTTTTCACATGACAGTCTGCAGATTGTTTTAACCTCATTAAATAGACTTCCAGCTCA
>TCONS_00044448
GTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAAGAGTGCCACAGCGGTGTAAAGGGCAGAGGTTTGGGAAAGACATACAGTCCTCCAAAACCTTGCACCGATGACACTCTCATAGCCAACTTTTAACGGACCATTTAGAAAACGAAAGGCCAGCGAGTATCGGAGGTTTACTGCCCACCACAACAACCTCCGTCCACCTTCACCAAAACACATCTCTCATCAGACAGAGCGAACGGTGGCTGCGGCAGAGCGGTGGAATGTGGAAAACTCTTACTTCTCTTACTCTCTCTGATCTTCCTTCTGTTTTGTCATGATTTGTGTATTCGTGCCCCTACAACTATGTTCTTATGATGTGTTGTGTGCTAGTGTAGATGTGAAACGATGAAAAAAAACCCGTACATGTCcaacttttaacttttattcgTTCAGATTTCACAGTATTGCGGAACATGACTGAATGAAATCAGTCGAGTTTGCGTTCGTTAACATCTGCAATGCTGGATGAAAAAGCGACGCCAtcgttttttatttacaaaactgCTTCTTAATTGATGCCGTTCgcattttgcttattttttttcccccaatcaAGTAGATTTAAGTTTGCTTTATTgcaattttaactttaaaaaaagtcCTTTGTGGGCCAAATTATCATACGATTTTTATTgggcttgtttgttttttatcagtACATCTACCTAAATGATCTATATCTTATTACCCAGACTAAAATCAGGACATTTGGATAAATTTTAACATCTGtgtaaaaatatcttttaaaatgtcAACCTTGGCCCTTTTTATCCGCTATTCGATCTTATCACTGTTGCTTGCAGGAGGACAGACAATCGTCATCATGTAAGTGTGTAAAGGGACATTTCTATCTATTTCTACACACTTTTCTTCCATGATTTTATTTTCCCTCCATAAAACGGAAGCGATTATACTCCCTCTTGTGGCTGATTTGCTGAACACATTCCCTGTTTGACCTCATTCACACATAGTTCAAGCATTGTCGGGttcttatattacttttttaacctAGAGTTGATTCAATAAAATGGTGTTTATCAAGGT
>TCONS_00044449
TTTTTATGAAACACAAAAAGTGGTCTTTATTGTATGGTGGGTTAAAAGATTCAGACTATAAGTTCCTTCATATTACTTCATATTACATACACCACTTTCGCATGTACACTCGTGcctattattcattttttaaatagtattattgcttaacaataataaataaatctgaaatgTTCTTCGAATTGTGTGGATTTGGTTTCAGTGTGACGCGTGCGCATCCCATTGTATGCGCCGAGGCCGTTTTTGGCGCGAGAGCTGCTCGCTGAGGCGCACGCTGATTGGCTGAACGCGCCGCTGGACGGATGCATGCGCGAGAGGCAGCAAACTCTGTGTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAAGAGTGCCACAGCGGTGTAAAGGGCAGAGGTTTGGGAAAGACATACAGTCCTCCAAAACCTTGCACCGATGACACTCTCATAGCCAACTTTTAACGGACCATTTAGAAAACGAAAGGCCAGCGAGTATCGGAGGTTTACTGCCCACCACAACAACCTCCGTCCACCTTCACCAAAACACATCTCTCATC
>TCONS_00044450
AGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAAGAGTGCCACAGCGGTGTAA
>TCONS_00044451
GTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACCTGGCATGAAGACGGAGACAAGAAGGAGAA
>TCONS_00044452
CATTGGGAGCGAGCAGCGCTGTCAATGCCACGTTTAAAACGTGATAGGATCAGGTGAAATCTGTTCTGCTCGGCCCGCGCTGTTGCTAAGCAAAGGCTCGGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTGGAAGGACTCTGACGAGGCAGACCTTGTGCTTGCAAAAGAAGCCAATCACAAGTGCCCACAGATTGTCATTGCCTTCTACGAGGAGCGTCTGACC
>TCONS_00044453
ATCTTTTTTATGAAACACAAAAAGTGGTCTTTATTGTATGGTGGGTTAAAAGATTCAGACTATAAGTTCCTTCATATTACTTCATATTACATACACCACTTTCGCATGTACACTCGTGcctattattcattttttaaatagtattattgcttaacaataataaataaatctgaaatgTTCTTCGAATTGTGTGGATTTGGTTTCAGTGTGACGCGTGCGCATCCCATTGTATGCGCCGAGGCCGTTTTTGGCGCGAGAGCTGCTCGCTGAGGCGCACGCTGATTGGCTGAACGCGCCGCTGGACGGATGCATGCGCGAGAGGCAGCAAACTCTGTGTGCAAGGAAAAAGCCGCCGCCGCCTCAGCCTCATTATCCAGCACGAATAGAGAAACGTCGAAAAATATCTCAGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAAGGAAACAGTGCAAGCCCACCAAGCAGCAAGTCCTCCAGTACAGGCCCCTCTTCAGCCCGTCCCAAAGACAGCAGTGGCAGCAGCAGCACCAGCAAGAGGAAAAACTCCGAGGAAGAGAACGGGAGCAGCAGCAAACCCAAGAAGAAAAAGGAGgATGAGATCCTTGTAGCGAGAGGGTTTGAGCGAGGCCTGGAGCCTGAGAAGATTATTGGAGCAACAGACTCCTGTGGAGACCTTATGTTCCTTATGAAGTG
>TCONS_00044454
TGTCATTGTGGATTCGCTTTGCATTGGGAGCGAGCAGCGCTGTCAATGCCACGTTTAAAACGTGATAGGATCAGGTGAAATCTGTTCTGCTCGGCCCGCGCTGTTGCTAAGCAAAGGCTCGGTGCGTTAGCGAGCACGACGATAGCACTCAAATAAATGCGAAAACTCATGTAAACGACTCGTTTGCAGCTGTTAAACGGTGAAAATCGTGGAAAGAAGTAGCGCGTGTGTGCTAATGACGCTAAATTAGCCTGCTATCTTGTGCCTAAACATCGGGGattcttgtttattgtttttttcgcAGGCGATGGTGACCTGCTAAGCTTGCTTATAGTTCGTCATATATCAAAAACAGCATTGTGAAATACATGTACTTATTTCTCAAACACGGGAGCTCTGAATGCTGTAATCCAGGACTCATCTCTGCTCTTTAGGAGGTCACGCCCAACAATAGAAGACTGTAGttcaaccACTTTCCTCCCCAGACCAGGGAGCCACACAGGTCAAATTTGCTTGTAGTAAAGACTTTCAGAATCAGCCATGGGAAAGAAGAGCCAGAACCGTGAAGATGATGAAGCTGCTTCCTCAGATGAGGAAGAGTACGTTGTGGAGAAGGTCTTGGACAGGAGAGTTGTGAAGGGGCGTGTGGAGTATTTCCTCAAATGGAAAGGCTTTACAGAGAAACACAACACATGGGAACCAGAGAAGAACCTGGACTGTCCAGAGCTTATCTCTGAGTTCATGAAGACCTACAAAAAA

Function

symbol description
cbx5 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5553 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

Ensembl:

ensembl_id ENSDARG00000061187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044447 False 2989 mRNA 0.41 7 36297221 36306356
TCONS_00044448 False 1867 mRNA 0.44 6 36298159 36306006
TCONS_00044449 False 1264 mRNA 0.48 5 36299018 36306337
TCONS_00044450 False 633 mRNA 0.50 4 36299187 36303216
TCONS_00044451 False 775 mRNA 0.50 6 36299206 36306006
TCONS_00044452 False 818 mRNA 0.50 6 36299235 36305874
TCONS_00044453 False 1028 mRNA 0.47 5 36301201 36306341
TCONS_00044454 True 759 mRNA 0.46 4 36301649 36305895

Neighbor

gene id symbol gene type direction distance location
XLOC_022535 NA coding downstream 18625 36110214 ~ 36278596 (-)
XLOC_022534 BX005254.4 coding downstream 201853 36092346 ~ 36095368 (-)
XLOC_022533 BX005254.3 coding downstream 208987 36081425 ~ 36088234 (-)
XLOC_022532 NA coding downstream 245395 36020796 ~ 36051826 (-)
XLOC_022531 calcoco1a coding downstream 293780 35981839 ~ 36003441 (-)
XLOC_022537 nfe2 coding upstream 5225 36311581 ~ 36316352 (-)
XLOC_022538 BX571773.1 coding upstream 15654 36322010 ~ 36322124 (-)
XLOC_022539 znf740b coding upstream 95216 36401572 ~ 36420157 (-)
XLOC_022540 csad coding upstream 118412 36424768 ~ 36441693 (-)
XLOC_022541 zgc:174906 coding upstream 136666 36443022 ~ 36449111 (-)
XLOC_022530 BX546466.1 non-coding downstream 432368 35864726 ~ 35864853 (-)
XLOC_022543 FO704757.2 non-coding upstream 203641 36509997 ~ 36510119 (-)
XLOC_022544 NA non-coding upstream 299388 36605744 ~ 36608783 (-)
XLOC_022548 BX321896.1 non-coding upstream 412019 36718375 ~ 36718495 (-)
XLOC_022550 CR926464.2 non-coding upstream 522116 36828472 ~ 36828588 (-)

Expression


Co-expression Network