Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_022537 |
| gene name | nfe2 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 36311581 ~ 36316352 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| nfe2 | Enables protein heterodimerization activity. Contributes to sequence-specific DNA binding activity. Acts upstream of or within several processes, including otic vesicle morphogenesis; regulation of primitive erythrocyte differentiation; and swim bladder inflation. Part of transcription regulator complex. Is expressed in blood; otic placode; otic vesicle; ventral mesenchyme; and ventral mesoderm. Orthologous to human NFE2 (nuclear factor, erythroid 2). |
| id | name | namespace |
|---|---|---|
| GO:1902882 | regulation of response to oxidative stress | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0048798 | swim bladder inflation | biological_process |
| GO:0071600 | otic vesicle morphogenesis | biological_process |
| GO:0010725 | regulation of primitive erythrocyte differentiation | biological_process |
| GO:0007596 | blood coagulation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-030124-1 | Enables protein heterodimerization activity. Contributes to sequence-specific DNA binding activity. Acts upstream of or within several processes, including otic vesicle morphogenesis; regulation of primitive erythrocyte differentiation; and swim bladder inflation. Part of transcription regulator complex. Is expressed in blood; otic placode; otic vesicle; ventral mesenchyme; and ventral mesoderm. Orthologous to human NFE2 (nuclear factor, erythroid 2). |
| ensembl_id | ENSDARG00000020606 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00044455 | False | 1640 | mRNA | 0.46 | 4 | 36311581 | 36316352 |
| TCONS_00044456 | True | 1366 | mRNA | 0.47 | 2 | 36311593 | 36313431 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_022536 | cbx5 | coding | downstream | 5225 | 36297221 ~ 36306356 (-) |
| XLOC_022535 | NA | coding | downstream | 32985 | 36110214 ~ 36278596 (-) |
| XLOC_022534 | BX005254.4 | coding | downstream | 216213 | 36092346 ~ 36095368 (-) |
| XLOC_022533 | BX005254.3 | coding | downstream | 223347 | 36081425 ~ 36088234 (-) |
| XLOC_022532 | NA | coding | downstream | 259755 | 36020796 ~ 36051826 (-) |
| XLOC_022538 | BX571773.1 | coding | upstream | 5658 | 36322010 ~ 36322124 (-) |
| XLOC_022539 | znf740b | coding | upstream | 85220 | 36401572 ~ 36420157 (-) |
| XLOC_022540 | csad | coding | upstream | 108416 | 36424768 ~ 36441693 (-) |
| XLOC_022541 | zgc:174906 | coding | upstream | 126670 | 36443022 ~ 36449111 (-) |
| XLOC_022542 | spryd3 | coding | upstream | 181166 | 36497518 ~ 36592436 (-) |
| XLOC_022530 | BX546466.1 | non-coding | downstream | 446728 | 35864726 ~ 35864853 (-) |
| XLOC_022543 | FO704757.2 | non-coding | upstream | 193645 | 36509997 ~ 36510119 (-) |
| XLOC_022544 | NA | non-coding | upstream | 289392 | 36605744 ~ 36608783 (-) |
| XLOC_022548 | BX321896.1 | non-coding | upstream | 402023 | 36718375 ~ 36718495 (-) |
| XLOC_022550 | CR926464.2 | non-coding | upstream | 512120 | 36828472 ~ 36828588 (-) |
