XLOC_022539 (znf740b)


Basic Information

Item Value
gene id XLOC_022539
gene name znf740b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36401572 ~ 36420157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044458
CTTAATACCAAACGCTTTACATTaaagaatgtaaaaaatatatcctTTATgatcttcttcttttttatttatttatttttattgaatgcttgaaaaacaataacaacaaatgtcATGAATCAAACAACATTCCAGGGGTTAGTCCAAGATAAGTGCCCTTCAAAGTCCCTCATCAAAGTCCTTGTTCGTATTGCTTTTAAGTTGGTTCATCCCTCAATAcactaaaatacattttcatttcaattttaaattcaGGGAAAAAATGTTTACACTTACAAAACTTGCTCTTGtgaatataaaatttgtccaacaaaaaaaaacaaggttcATGAAATAAGTCTTATTTTCCTTTTCACATTTATGGAAACCAAAGATAACATTCTTATATGTAAATTCAAAATCTGCCTTCACATAAACTTTTATCAAATCAAGAACATCACATCAAAATGCAATTAAATGAGGGAAATTCCAAAATAATCCTTTACCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTACACGACaatgaaatcaaatcaaaagGTCGTAGAGTTTGTTCACACCGGAAGTAGCCTGTGATTTGTTGCCTGCTCGGTGATCACGTGACACGCGCTCTCCCCAGAGAACACTTCCGGTAACGTTTCCTGTGTTtgtaaactgaagaaaaaaaaaattgtccgaCAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAGGCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGagccccaacacacacacacacactctcagcacTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGGGCTGGGTTGCTGGGCTGTGAAGCAGTGCTGTCCAGCATGGCACTCATGCAGGCCGGCTCAATGCCCAGCCATAGGAAGATGAGAGAAAGCAACCACAACCAGGACACAcacagccaacacacacacatggtgcTGCCCTCTGGAGTCAGCTGTCCACCACTGCTCATCCGCAAAGACCGAGAGTTTCACTCGTCCAGGCTTTTGGATGAAAAGGATGTGCAAATCAGCCAGAACGTGCAGCCAAAGAAGAAGAACAGGAAGTCTGGACTTCCCACCAGAATGAGAGAGAAACCCCAGGCATGCATTGAAGTGGAGATTCCTGACGATCATGATGATCACTCGCTCGGCTCTCAAGTGCAGAAGAATTTCATATGCGAGCACTGCTATAGTGCTTTCCGCAGTAGTTACCATCTCAAACGTCACATTCTCACTCATACGGGGGAAAAGCCATTTGGTTGTGATATGTGTGATATGAGGTTTATCCAGCGCTACCACCTGGAGAGACACAAGCGTGTTCACAGCGGTGAGAAGCCTTATCAGTGTGACCGGTGCCAACAGAACTTTTCCAGAACCGACCGGTTACTGCGGCATCGACGTTTGTGTGCTGTGGGCGTCCCTAAAGAGGAGAACCAGCCGTGCTGTGAGGGACGGTCGTATTCTCAGGACCCGTCCCAGCACGCGGCATCGTGGAGCCCACTGCAGACAAACAACAGCAGGCTGGCGGTGTGACAGTCTGTTCAATCACTCGTAGCAAATACAATGGACTCCAACATGACCCGACCTGGGGTCTGAGCCTATAAACTGTTTAAAGACTCCAGCACTGCCCCAGTGGACTCTTTTTATACCGGCTAGATTCTGGAAAATAgcgtattttttattttagatggtACTGTGATGAGCGAACGGGTTAGTTGTGCATTCAGTCCAGGCAAATAATGGCATCTGGTAGTTTAGAATTAGTTCATTCTGTAGCTCCTGTGCAGAACTGTAGATTGTCGTGATTATCTCGATGCTCAGCGAACCTTTGCATATAACATCAAATTTGATGAAAGGATAGGTCAATTATGAGAATAGTCCAAAagagaaaattctgtcattatttactcacctgatctcatttcaaacctgtttgagtttcttgctATTGTTGAATGTTGGAAACCAAATGCCATTGACTATGAAAATCAATGTCAACAACAATGCTGGGTTGTTGCAACCCATTACTTggtcaaatataaacaaacataactATTAGGTcaataagtgcaatttaaattcAATTGGGAAAATTGGGTTACAACAATCATTGGCATTTTTCTAAAAGTCCACTTttgtgttttgcaaacaaaaagtgCAACTCGTTAATGGTtcaaccacttgagagtgagtaaatggggagtatagttttatttttggttgaactatttcTTAAAGGGCAAACCTGGAGTTTCACATGTGATTTGGTCATGCAAATTTGTTCCAAAACAATAGAGAATTCTGCCctatatattgttttacacaactTTTGATAATAGATCAACTTTTTTTTAGCCCCCCCAAATATCACTGAATATATAGTCACAGAACCTTTACGATATGAATCTGCGAACGACTAGAGTTGTTGCACGTGGCCTTTTTAATCTGAGAAATTAGCTTAGTGACAATAGATACATTGTGAATTTAGTAGTTTTCCCAACGTGCACATGAATCAATTCCTGTTTTATGAGGAGTAAATTCTCAATAAAGAAATACTTCACCCTAAAATAAAACTATAGCTCATCATTA
>TCONS_00044459
CTTCCGGTAACGTTTCCTGTGTTtgtaaactgaagaaaaaaaaaattgtccgaCAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAGATGACAGGTTCTGTTAGTGGTGGGCTGGATGTGTGGCAGCGTCAGACAGAGATGGATGTTACCCTGGCTTTCTGTTTCTAGGCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGagccccaacacacacacacacactctcagcacTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGGGCTGGGTTGCTGGGCTGTGAAGCAGTGCTGTCCAGCATGGCACTCATGCAGGCCGGCTCAATGCCCAGCCATAGGAAGATGAGAGAAAGCAACCACAACCAGGACACAcacagccaacacacacacatggtgcTGCCCTCTGGAGTCAGCTGTCCACCACTGCTCATCCGCAAAGACCGAGAGTTTCACTCGTCCAGGCTTTTGGATGAAAAGGATGTGCAAATCAGCCAGAACGTGCAGCCAAAGAAGAAGAACAGGAAGTCTGGACTTCCCACCAGAATGAGAGAGAAACCCCAGGCATGCATTGAAGTGGAGATTCCTGACGATCATGATGATCACTCGCTCGGCTCTCAAGTGCAGAAGAATTTCATATGCGAGCACTGCTATAGTGCTTTCCGCAGTAGTTACCATCTCAAACGTCACATTCTCACTCATACGGGGGAAAAGCCATTTGGTTGTGATATGTGTGATATGAGGTTTATCCAGCGCTACCACCTGGAGAGACACAAGCGT
>TCONS_00044460
aaaaaaaattgtccgaCAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAGATGACAGGTTCTGTTAGTGGTGGGCTGGATGTGTGGCAGCGTCAGACAGAGATGGATGTTACCCTGGCTTTCTGTTTCTAGGCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGagccccaacacacacacacacactctcagcacTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGGTCTGGAGTCTCTCTGTGACGCATAATGGCCACTGATTTTGTGCTAATCATGGGATGGACCACACAAAAATTATGCCAAGAACATATTTACATTTTGGAGAAAATTATCTCTTTTGGGAtagattgttatttttattgaaattatgAAATGCAGTTTTGTACAttagagtatttttttttagctattttagGTGATAGATTTTTAATACTGcaataaacagaaatatttctGTACCAA
>TCONS_00044461
AACACTTCCGGTAACGTTTCCTGTGTTtgtaaactgaagaaaaaaaaaattgtccgaCAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAGGCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGagccccaacacacacacacacactctcagcacTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGGTCTGGAGTCTCTCTGTGACGCATAATGGCCACTGATTTTGTGCTAATCATGGGATGGACCACACAAAAATTATGCCAAGAACATATTTACATTTTGGAGAAAATTATCTCTTTTGGGAtagattgttatttttattgaaattatgAAATGCAGTTTTGTACAttagagtatttttttttagctattttagGTGATAGATTTTTAATACTGcaataaacagaaatatttctGTACCAA
>TCONS_00044746
TCATGATGATAAAGAGCAGTTTATTGAAGAATCTTAGATAAATCCAACAAGTGTTTTTACaccacaagcaacagcaatggaaaaCTTCACAACATTGTCCAGATTTcgcagtgattggttgcagctggaaggtcatccgCTTGAAATGGAGACATTCTCTTATTTCTTCCTCAGGAAAACACGTGTTGccaattcatctacagcacatgtctttggactgtgggggaaactggagcacccggaggaaacccacgccaacacgggaagaacatgcaaattccacacagaaacgccaactgacccagccgaggctcgaaccagcaacctcttTGCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTACACGACaatgaaatcaaa
>TCONS_00044747
TGATGATAAAGAGCAGTTTATTGAAGAATCTTAGATAAATCCAACAAGTGTTTTTACaccacaagcaacagcaatggaaaaCTTCACAACATTGTCCAGATTTcgcagtgattggttgcagctggaaggtcatccgccaattcatctacagcacatgtctttggactgtgggggaaactggagcacccggaggaaacccacgccaacacgggaagaacatgcaaattccacacagaaacgccaactgacccagccgaggctcgaaccagcaacctcttTGCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTAC

Function

symbol description
znf740b Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-660 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF740 (zinc finger protein 740).

Ensembl:

ensembl_id ENSDARG00000061174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044458 False 2663 mRNA 0.41 7 36401572 36418708
TCONS_00044459 False 823 mRNA 0.50 6 36404934 36418059
TCONS_00044460 False 510 processed_transcript 0.40 3 36413698 36418022
TCONS_00044461 False 470 lncRNA 0.38 3 36413698 36418063
TCONS_00044746 False 404 lncRNA 0.44 4 36418152 36420157
TCONS_00044747 True 335 lncRNA 0.45 3 36418169 36420154

Neighbor

gene id symbol gene type direction distance location
XLOC_022538 BX571773.1 coding downstream 79448 36322010 ~ 36322124 (-)
XLOC_022537 nfe2 coding downstream 85220 36311581 ~ 36316352 (-)
XLOC_022536 cbx5 coding downstream 95216 36297221 ~ 36306356 (-)
XLOC_022535 NA coding downstream 122976 36110214 ~ 36278596 (-)
XLOC_022534 BX005254.4 coding downstream 306204 36092346 ~ 36095368 (-)
XLOC_022540 csad coding upstream 4611 36424768 ~ 36441693 (-)
XLOC_022541 zgc:174906 coding upstream 22865 36443022 ~ 36449111 (-)
XLOC_022542 spryd3 coding upstream 77361 36497518 ~ 36592436 (-)
XLOC_022543 FO704757.2 coding upstream 89840 36509997 ~ 36510119 (-)
XLOC_022544 NA coding upstream 185587 36605744 ~ 36608783 (-)
XLOC_022533 BX005254.3 non-coding downstream 313338 36081425 ~ 36088234 (-)
XLOC_022532 NA non-coding downstream 349746 36020796 ~ 36051826 (-)
XLOC_022548 BX321896.1 non-coding upstream 298218 36718375 ~ 36718495 (-)
XLOC_022550 CR926464.2 non-coding upstream 408315 36828472 ~ 36828588 (-)
XLOC_022551 NA non-coding upstream 447888 36868045 ~ 36869244 (-)

Expression


Co-expression Network