Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_022550 (CR926464.2)

Basic Information

Item	Value
gene id	XLOC_022550
gene name	CR926464.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	36828472 ~ 36828588 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044475
AGCCACAGCCATTTCAcgctgcagcccaagaccggttgctcgctgaagctaagcagggctgaacctggtcagtacctgaatgggagattGCATGGGACAACTAGGTTGcttttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108194

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00044475	True	117	rRNA	0.54	1	36828472	36828588

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022547	CU571398.1	coding	downstream	73787	36711024 ~ 36754685 (-)
XLOC_022546	agap2	coding	downstream	103897	36675207 ~ 36724575 (-)
XLOC_022548	BX321896.1	coding	downstream	109977	36718375 ~ 36718495 (-)
XLOC_022545	zbtb39	coding	downstream	158103	36660750 ~ 36670369 (-)
XLOC_022544	NA	coding	downstream	219689	36605744 ~ 36608783 (-)
XLOC_022551	NA	coding	upstream	39457	36868045 ~ 36869244 (-)
XLOC_022552	ube2j2	coding	upstream	41766	36870354 ~ 36884290 (-)
XLOC_022553	acap3a	coding	upstream	60325	36888913 ~ 36934944 (-)
XLOC_022554	CABZ01054876.1	coding	upstream	131203	36959791 ~ 36959912 (-)
XLOC_022555	NA	coding	upstream	168616	36997204 ~ 37000484 (-)
XLOC_022543	FO704757.2	non-coding	downstream	318353	36509997 ~ 36510119 (-)
XLOC_022538	BX571773.1	non-coding	downstream	506348	36322010 ~ 36322124 (-)
XLOC_022535	NA	non-coding	downstream	549876	36110214 ~ 36278596 (-)
XLOC_022558	CR762407.1	non-coding	upstream	448485	37277073 ~ 37280713 (-)
XLOC_022562	NA	non-coding	upstream	694949	37523537 ~ 37525054 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
grasscarp (Ctenopharyngodon idella)	G276094	NA	non-coding	CI01000069	null	4699271 ~ 4703469 (-)
eurasian perch (Perca fluviatilis)	G231021	NA	non-coding	NC_053134.1	CM020931.1	28351029 ~ 28351443 (+)