XLOC_022552 (ube2j2)


Basic Information

Item Value
gene id XLOC_022552
gene name ube2j2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36870354 ~ 36884290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044477
ATCACTTCCTGGTGTTGCGGTGGCCATATTGGCATGGGGGATAGATGACAATTTCACCTTAGCCGAAGAgctacatttttgttatttttgaaagTTTATCCAGGGCGTGTTCACTCGAAAATAAAGGGATATCGATATATCACCAGAACCTGACCCTGGTCGATCCCGTGGAGGGCGTTGAAAGAGATGAGCAACAACTTAAACAAGAGGGCCCCAACCACAGCAACACAGCGGCTAAAACAGGATTACCTGCGCATCAAGAAAGATCCAGTCCCGTATATCTGTGCTGAACCTCTGCCCTCCAACATTTTGGAATGGCATTATCTAGTTCGTGGCCCTGAGAAAACTCCATATGAAGGTGGTTACTATCATGGCAAACTCATTTTTCCACGGGAATTTCCCTTCAAGCCGCCGAGCATATACATGATCACACCCAACGGCAGATTTAAATGCAACACGAGGTTGTGTCTTTCCATCACAGATTTTCACCCTGACACGTGGAACCCTGCGTGGTCTGTGTCCACCATTTTAACCGGCCTCCTGAGCTTCATGGTGGAAAAAGGCCCGACTCTTGGCAGTATCGAAACTTCTGACTTCACAAAACGACAGCTGGCCTCCCAGAGTCTTGCATTCAACATCAAGGACAAAGTTTTTTGCGAACTCTTTCCAGATGTTGTTGAAGAAATCAAGCAGAAGCAGCGTATGCAGGAGGAGCTCAGGTCACGCTCGCAGGCGCTGCCGCTTCCCGACGTGGTTCCGGACGGTGAAGCCCATCATGCACAAAACGGCCACCTGCCCCTGAACGGGCACCTGCCGCCTGGCGCAAACCATCCCGCTGACCTCCAGCAGGTCAACCGAAACCATGGACTCCTGGGTGGAGCGCTTGCTAATTTGTTCGTCATCGTAGGCTTCGCTGCATTCGCCTACACGGTCAAGTACGTTCTGCGGAGCATCGCTCAGGAATGATCCGGCCAATGAGAGAGACCGACCGACGGGCGGGACAACAGGCTGGTGCTGTTCTCACGACCAAAATAGGTAGCGAGAAATCAAAAAAGGGGTTTTCTCACAACCAAATAAAAATGAAGCAGTGTCCCATTAA
>TCONS_00044478
GTACTTAATGTATAAGTAGACGTCCCGTTACACTAAATGTTGATATCCACATAGGCAGCTCACAATGTTTTGAAACGCAGTCAGCGTCTCCGTTTAAGCGCCCTGTTTAACGTTACTTCTGTTGTTGTGATTTAACCATTATTTCTCCAGGTTGTCACTGTTATTCTATTATTTTGGTGAAAGTTTCTGATTAGTAGGATGCTAACCCTTCTGTAAATGATGACAAGCTGCTTTCTTTATGATGAGCAACAACTTAAACAAGAGGGCCCCAACCACAGCAACACAGCGGCTAAAACAGGATTACCTGCGCATCAAGAAAGATCCAGTCCCGTATATCTGTGCTGAACCTCTGCCCTCCAACATTTTGGAATGGCATTATCTAGTTCGTGGCCCTGAGAAAACTCCATATGAAGGTGGTTACTATCATGGCAAACTCATTTTTCCACGGGAATTTCCCTTCAAGCCGCCGAGCATATACATGATCACACCCAACGGCAGATTTAAATGCAACACGAGGTTGTGTCTTTCCATCACAGATTTTCACCCTGACACGTGGAACCCTGCGTGGTCTGT

Function

symbol description
ube2j2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04120 Ubiquitin mediated proteolysis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070410-28 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2).

Ensembl:

ensembl_id ENSDARG00000061161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044477 False 1099 mRNA 0.50 7 36870354 36884290
TCONS_00044478 True 573 mRNA 0.43 6 36874769 36884012

Neighbor

gene id symbol gene type direction distance location
XLOC_022551 NA coding downstream 1110 36868045 ~ 36869244 (-)
XLOC_022549 hipk1a coding downstream 12388 36816486 ~ 36857966 (-)
XLOC_022550 CR926464.2 coding downstream 41766 36828472 ~ 36828588 (-)
XLOC_022547 CU571398.1 coding downstream 115669 36711024 ~ 36754685 (-)
XLOC_022546 agap2 coding downstream 145779 36675207 ~ 36724575 (-)
XLOC_022553 acap3a coding upstream 4623 36888913 ~ 36934944 (-)
XLOC_022554 CABZ01054876.1 coding upstream 75501 36959791 ~ 36959912 (-)
XLOC_022555 NA coding upstream 112914 36997204 ~ 37000484 (-)
XLOC_022556 ints11 coding upstream 173313 37057603 ~ 37085968 (-)
XLOC_022557 zgc:193690 coding upstream 211502 37095792 ~ 37113430 (-)
XLOC_022548 BX321896.1 non-coding downstream 151859 36718375 ~ 36718495 (-)
XLOC_022544 NA non-coding downstream 261571 36605744 ~ 36608783 (-)
XLOC_022543 FO704757.2 non-coding downstream 360235 36509997 ~ 36510119 (-)
XLOC_022558 CR762407.1 non-coding upstream 392783 37277073 ~ 37280713 (-)
XLOC_022562 NA non-coding upstream 639247 37523537 ~ 37525054 (-)
XLOC_022566 NA non-coding upstream 837094 37721384 ~ 37724683 (-)

Expression


Co-expression Network