XLOC_022553 (acap3a)


Basic Information

Item Value
gene id XLOC_022553
gene name acap3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36888913 ~ 36934944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044479
GCAAGAAAAGGAGGCCTGGATTAAGGCGAAGTATGTGGAGAAGAAGTTTCTGAAGAAGATGATGACGGGTGAGGTTGTGGTGAACGGCGGGAGGAAATCTGAGCGGCGCTGGAACTCCAGAAAGTGCAGGAGGCACAACAGTGCCACAACCGTCCCCAAAACACACCGCAAATACAGGCAGGATCCAGGCAGTGCATCTCCAGCAACCCTGTCCTCAGCAACTGCTGCTCTGGAGAGAAAGTTCAGACGGGAATCGCTCTTCTGCCCGGATGAGTTAGACAACCTCTTTTCCTATTTCGACACTGGTTCAGGGCCTCGCAGTCCTACAGGTCTGAGCAGTGACAGTGGGTTAGGAGGCAGCACTGACGGCAGCACTGACGTCTTGGTGTTCGAGTCTGTGGTGGACAGCGTCACAGAGGAGGAGTGTGAGGTGTCTGAGGACTCTAGTAATGAGGCTGAACTGGAGCCAGAAGCATCAGATCCTGAGGACTCGAGAGAGCTGGATGCTGGAGCGTTACTCTACAAGGCCTGTCAGGCACGCAATTTGCCTGTTATGGCCGAAGCTCTGGCACACGGAGCCGACGTCAACTCTGTCAATGAAGAGGACGAGGGGAAAAGCCCGCTCATTCAGGCTGTGATTGGGgGTTCTTTAATAGCCTGCGAGTTTCTGCTGCAAAATAGTGCTGATGTGAACCAGAGAGATCACAGGGGAAGAGGCCCGCTGCATCACGCCACTTATTTAGGACACACTGGgCAAGTGTGCTTGTTTCTGAAACGAGGAGCAACTCAAAACGACGGGGATGAGGATGGACAGGACCCGCTGAGCATAGCGGTTCAAGCGGCTAACGCTGATATCGTTACTCTGTTACGTCTGGCACGGATGAATGAGGAGATGCGCGAGTCGGAGGGCCCGTTCGGCCAGCCAGGTGACACCACATACCTGGATATTTTCCGAGAGTTTTCCCACATGGCATCCCACAATCCGGAGAAGCTGAAGCGGAGAAGTGTTCACTTCCGTCACTCCTTCAGAGTGTGAACGAGCCATCGACACCAATTTTTGGACACCAATCCAGCTGGAGCAGAAGACACTTTGACTGGCTGTTTTCAAATGAGTGATGGACTTTATTCAGCAAATTGTGGTcatgttttgtgtattttaatgatatttttatagCTTTATGAGGGTGAGCTGGACTTAACCCTGCAGTGTTTGGTCTATTTTCTTTATTTGTCTTCTGCTTTAGTTAGACAGTAAAAGCACATGCACACCAAGAACAATAACTATAAAGAAACAGTATAAAGATTACTTTATTACCATCCACAATAATGCACAAAAATATTCTGTTTATGTTATGCGAACGTTTATCTGGATGGATTCTTATGATTGGCTTATTTCATTCTGGATGAAATTTTTCTGAAAGTGCACAAATAACattcttctgttttgtttttgt
>TCONS_00044480
TCATAAGTATGCATTCAGCCATAAAGTATGAGGAAGCatgtatgtattatgtatttttttgcattttatactattatctgttttgttattttattttttgaacagtTTCAAGTTTCTATTTCTTGATGGCCATttgtatacatacattttttatcgCATATACTCAGAAGCGTGATGTGTTTCAGTTTCCCTTATCTTGTCATTCAAAGCATCATCGATCGTCGATGTAATGCAGAACAAAATTACGTTACATTGACACATAAAAAACATGCAGCAGGTCAGTGTTTAGCGTGTGGGTCGTCAGCTGTATGCTAATGTGCTTTAGCTCAGGCAGTGGGCAGCAGGTGGAGCTACTCATGATGACTGAGttcaacacactcacacatacagacacacattcTGCACGGACTGCACACACGTTCACTTCAGCTCAGACGCTTTATTGGACCCAATGATTctaaaatgcatcaaatatttAAGGAGGAAGATATTCAGCAGGTTGGACTTGACTTTGGACTTTGCGTATGATGATCCAAAGTTGGAGTACAATGTGGATGCGCCGAATGGGCTGGTGATGGAGGGTTACCTGTTTAAAAGGGCCAGTAATGCCTTCAAAACGTGGAATAGGCGGTGGTTCTCCATTCAAAACAGCCAGTTAGTTTATCAGAAGAAACTAAAGGACTCTCTGACTGTCGTTGTGGAGGATTTAAGACTGTGTTCCGTCAAACCATGTGAAGACATCGAGAGGAGATTCTGTTTTGAAGTCGTGTCGCCCACCAAGAGCTGTATGCTGCAGGCAGAGTCTGAGAAACTCCGGCAGGCCTGGATTCAAGCTGTTCAAGCCAGTATTGCCTCAGCATACAGAGAGAGTCCAGACAACTACTATATTGAGCGCCTGGACCGGACGGCGTCTCCCTCCATCAGCAGTATAGACTCAGCGAGTGAATCGCGCGAGCGCAGCGTCAGAGGAGAGAATATCCTGCAGAGGATCCTCAGTCTGCCGGGGAATCAGCAGTGCTGTGACTGTGCTCAGACGGAGCCACGCTGGGCCAGCATTAACCTGGGCGTCCTGCTCTGCATCGAGTGCTCCGGCATTCACAGGAGTTTGGGAGTTCACTGTTCAAAAGTGCGTTCTCTCACTCTGGACTCATGGGAACCGGAGTTACTGAAGCTGATGTGTGAATTGGGGAACAGTATTATCAACCACATCTATGAAGGCAGCTGTGAAGAGCAGGGCCTGAAGAAACCAGCACCCAACAGCTCCAGGCAAGAAAAGGAGGCCTGGATTAAGGCGAAGTATGTGGAGAAGAAGTTTCTGAAGAAGATGATGACGGGTGAGGTTGTGGTGAACGGCGGGAGGAAATCTGAGCGGCGCTGGAACTCCAGAAAGTGCAGGAGGCACAACAGTGCCACAACCGTCCCCAAAACACACCGCAAATACAGGCAGGATCCAGGCAGTGCATCTCCAGCAACCCTGTCCTCAGCAACTGCTGCTCTGGAGAGAAAGTTCAGACGGGAATCGCTCTTCTGCCCGGATGAGTTAGACAACCTCTTTTCCTATTTCGACACTGGTTCAGGGCCTCGCAGTCCTACAGGTCTGAGCAGTGACAGTGGGTTAGGAGGCAGCACTGACGGCAGCACTGACGTCTTGGTGTTCGAGTCTGTGGTGGACAGCGTCACAGAGGAGGAGTGTGAGGTGTCTGAGGACTCTAGTAATGAGGCTGAACTGGAGCCAGAAGCATCAGATCCTGAGGACTCGAGAGAGCTGGATGCTGGAGCGTTACTCTACAAGGCCTGTCAGGCACGCAATTTGCCTGTTATGGCCGAAGCTCTGGCACACGGAGCCGACGTCAACTCTGTCAATGAAGAGGACGAGGGGAAAAGCCCGCTCATTCAGGCTGTGATTGGGgGTTCTTTAATAGCCTGCGAGTTTCTGCTGCAAAATAGTGCTGATGTGAACCAGAGAGATCACAGGGGAAGAGGCCCGCTGCATCACGCCACTTATTTAGGACACACTGGgCAAGTGTGCTTGTTTCTGAAACGAGGAGCAACTCAAAACGACGGGGATGAGGATGGACAGGACCCGCTGAGCATAGCGGTTCAAGCGGCTAACGCTGATATCGTTACTCTGTTACGTCTGGCACGGATGAATGAGGAGATGCGCGAGTCGGAGGGCCCGTTCGGCCAGCCAGGTGACACCACATACCTGGATATTTTCCGAGAGTTTTCCCACATGGCATCCCACAATCCGGAGAAGCTGAAGCGGAGAAGTGTTCACTTCCGTCACTCCTTCAGAGTGTGA
>TCONS_00044481
TCATAAGTATGCATTCAGCCATAAAGTATGAGGAAGCatgtatgtattatgtatttttttgcattttatactattatctgttttgttattttattttttgaacagtTTCAAGTTTCTATTTCTTGATGGCCATttgtatacatacattttttatcgCATATACTCAGAAGCGTGATGTGTTTCAGTTTCCCTTATCTTGTCATTCAAAGCATCATCGATCGTCGATGTAATGCAGAACAAAATTACGTTACATTGACACATAAAAAACATGCAGCAGGTCAGTGTTTAGCGTGTGGGTCGTCAGCTGTATGCTAATGTGCTTTAGCTCAGGCAGTGGGCAGCAGGTGGAGCTACTCATGATGACTGAGttcaacacactcacacatacagacacacattcTGCACGGACTGCACACACGTTCACTTCAGCTCAGACGCTTTATTGGACCCAATGATTctaaaatgcatcaaatatttAAGGAGGAAGATATTCAGCAGGTTGGACTTGACTTTGGACTTTGCGTATGATGATCCAAAGTTGGAGTACAATGTGGATGCGCCGAATGGGCTGGTGATGGAGGGTTACCTGTTTAAAAGGGCCAGTAATGCCTTCAAAACGTGGAATAGGCGGTGGTTCTCCATTCAAAACAGCCAGTTAGTTTATCAGAAGAAACTAAAGGACTCTCTGACTGTCGTTGTGGAGGATTTAAGACTGTGTTCCGTCAAACCATGTGAAGACATCGAGAGGAGATTCTGTTTTGAAGTCGTGTCGCCCACCAAGAGCTGTATGCTGCAGGCAGAGTCTGAGAAACTCCGGCAGGCCTGGATTCAAGCTGTTCAAGCCAGTATTGCCTCAGCATACAGAGAGAGTCCAGACAACTACTATATTGAGCGCCTGGACCGGACGGCGTCTCCCTCCATCAGCAGTATAGACTCAGCGAGTGAATCGCGCGAGCGCAGCGTCAGAGGAGAGAATATCCTGCAGAGGATCCTCAGTCTGCCGGGGAATCAGCAGTGCTGTGACTGTGCTCAGACGGAGCCACGCTGGGCCAGCATTAACCTGGGCGTCCTGCTCTGCATCGAGTGCTCCGGCATTCACAGGAGTTTGGGAGTTCACTGTTCAAAAGTGCGTTCTCTCACTCTGGACTCATGGGAACCGGAGTTACTGAAGCTGATGTGTGAATTGGGGAACAGTATTATCAACCACATCTATGAAGGCAGCTGTGAAGAGCAGGGCCTGAAGAAACCAGCACCCAACAGCTCCAGGCAAGAAAAGGAGGCCTGGATTAAGGCGAAGTATGTGGAGAAGAAGTTTCTGAAGAAGATGATGACGGGTGAGGTTGTGGTGAACGGCGGGAGGAAATCTGAGCGGCGCTGGAACTCCAGAAAGTGCAGGAGGCACAACAGTGCCACAACCGTCCCCAAAACACACCGCAAATACAGGCAGGATCCAGGCAGTGCATCTCCAGCAACCCTGTCCTCAGCAACTGCTGCTCTGGAGAGAAAGTTCAGACGGGAATCGCTCTTCTGCCCGGATGAGTTAGACAACCTCTTTTCCTATTTCGACACTGGTTCAGGGCCTCGCAGTCCTACAGGTCTGAGCAGTGACAGTGGGTTAGGAGGCAGCACTGACGGCAGCACTGACGTCTTGGTGTTCGAGTCTGTGGTGGACAGCGTCACAGAGGAGGAGTGTGAGGTGTCTGAGGACTCTAGTAATGAGGCTGAACTGGAGCCAGAAGCATCAGATCCTGAGGACTCGAGAGAGCTGGATGCTGGAGCGTTACTCTACAAGGCCTGTCAGGCACGCAATTTGCCTGTTATGGCCGAAGCTCTGGCACACGGAGCCGACGTCAACTCTGTCAATGAAGAGGACGAGGGGAAAAGCCCGCTCATTCAGGCTGTGATTGGGgGTTCTTTAATAGCCTGCGAGTTTCTGCTGCAAAATAGTGCTGATGTGAACCAGAGAGATCACAGGGGAAGAGGCCCGCTGCATCACGCCACTTATTTAGGACACACTGGgCAAGTGTGCTTGTTTCTGAAACGAGGAGCAACTCAAAACGACGGGGATGAGGATGGACAGGACCCGCTGAGCATAGCGGTTCAAGCGGCTAACGCTGATATCGTTACTCTGTTACGTCTGGCACGGATGAATGAGGAGATGCGCGAGTCGGAGGGCCCGTTCGGCCAGCCAGGTGACACCACATACCTGGATATTTTCCGAGAGTTTTCCCACATGGCATCCCACAATCCGGAGAAGCTGAAGCGGAGAAGTGTTCACTTCCGTCACTCCTTCAGGTCTGCTagatcaaatattatttaa

Function

symbol description
acap3a Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ACAP3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3).

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1711 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ACAP3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3).

Ensembl:

ensembl_id ENSDARG00000075990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044479 False 1454 mRNA 0.48 9 36888913 36910656
TCONS_00044480 False 2302 mRNA 0.50 17 36889331 36934944
TCONS_00044481 True 2320 mRNA 0.49 16 36891680 36934944

Neighbor

gene id symbol gene type direction distance location
XLOC_022552 ube2j2 coding downstream 4623 36870354 ~ 36884290 (-)
XLOC_022551 NA coding downstream 19669 36868045 ~ 36869244 (-)
XLOC_022549 hipk1a coding downstream 30947 36816486 ~ 36857966 (-)
XLOC_022550 CR926464.2 coding downstream 60325 36828472 ~ 36828588 (-)
XLOC_022547 CU571398.1 coding downstream 134228 36711024 ~ 36754685 (-)
XLOC_022554 CABZ01054876.1 coding upstream 24847 36959791 ~ 36959912 (-)
XLOC_022555 NA coding upstream 62260 36997204 ~ 37000484 (-)
XLOC_022556 ints11 coding upstream 122659 37057603 ~ 37085968 (-)
XLOC_022557 zgc:193690 coding upstream 160848 37095792 ~ 37113430 (-)
XLOC_022558 CR762407.1 coding upstream 342129 37277073 ~ 37280713 (-)
XLOC_022548 BX321896.1 non-coding downstream 170418 36718375 ~ 36718495 (-)
XLOC_022544 NA non-coding downstream 280130 36605744 ~ 36608783 (-)
XLOC_022543 FO704757.2 non-coding downstream 378794 36509997 ~ 36510119 (-)
XLOC_022562 NA non-coding upstream 588593 37523537 ~ 37525054 (-)
XLOC_022566 NA non-coding upstream 786440 37721384 ~ 37724683 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01833609_01860272 CENB5, ACAP3 coding CI01000001 null 1833261 ~ 1860953 (+)
bowfin (Amia calva) AMCG00002003 NA coding CM030136.1 CM030136.1 133459 ~ 152192 (-)