XLOC_022557 (zgc:193690)


Basic Information

Item Value
gene id XLOC_022557
gene name zgc:193690
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37095792 ~ 37113430 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044486
GGCAGTGTGCACATTCTCGTGAAGCCGCGTGAAGTGAACAGTCCGTCATCATCAGAAGAGTTATCAAGACCGGTTAAAAAGTTAATATATCTGCGATTAAGCCATGTCAACCGACTCGTGGGCTTTAGCTGTGGACGAACAAGAGTCTACAACCAAGCCTGTTGGGAACCTGCGGATTATGGAAGCAGAAAATGCATCTTTGCATCAGAATAATGgtgatgatgaagaagatgaaAAAGAGGACAGAGCCACACAGAGTctcctgaacaagctgatcagaAGCAATCTGGTCAATAACACAAACCAGGTGGAGGTTCTTCAGAGAGACCCAAACTCACCGCTTTATTCAGTCAAGACTTTCGAGGAGCTGAGACTGAAACCTCAGTTGCTCAAAGGCGTCTATGAAATGGGCTTCAACAGACCTTCTAAAATCCAAGAGAATGCCCTTCCCATGATGCTGGCTGAACCACCTCAGAATCTGATTGCTCAGTCTCAGTCTGGCACTGGTAAAACGGCTGCATTCGTTCTGGCTATGCTCAGTCATGTGGACCCAGCCTGTAAATGGTCGCAGTGTTTGTGCATTTCCCCCACATATGAGCTGGCTCTGCAGACGGGCAAAGTCATCGAGCAGATGGGCAAATTTTATCCGGAAGTCACACTGGCATATGCAGTTCGAGGACATAGAATGGAGCGTGGCGTAAGGATCAAGGATCAGATCGTCATCGGCACACCTGGAACGGTTCTGGACTGGTGCATTAAGCTGAAACTCATAGACCCCAAAAAGATCAAAGTGTTTGTTCTGGACGAGGCCGATGTCATGATCGCCACACAGGGACACCAGGACCAGAGCATTCGCATTCAGAGAATGCTGCCCAAAGGCTGCCAGATGCTGCTTTTCTCTGCCACTTTTGAGGACTCTGTGTGGAAGTTTGCCGAGCGGGTCGTGCCTGATCCCAACATCATCAAGCTAAAACGAGAAGAGGAGACCCTGGACACTATCAAGCAGTACTACGTGCTCTGCAACAGCAAAGAAGACAAGTTCAATGCGCTCTGCAACATCTATGGAGCCATCACTATCGCACAAGCTATGATCTTTTGTCATACTAGGAAAATGGCCAACTGGCTTGCTGGCCAGATGTCTAAAGAGGGCCACCAGGTGGCGCTGCTCAGTGGAGAAATGGTGGTCGAGCAAAGAGCCGCAGTTATTGAACGCTTCAGAGACGGCAAGGAGAAAGTCCTCATCACTACTAATGTCTGTGCAAGAGGTATTGATGTTGAACAAGTGTCGGTGGTGATCAACTTTGACCTTCCCCTGGACAAAGATAGCAATCCAGACAACGAGACATACCTCCACCGGATTGGCAGGACTGGGCGGTTTGGCAAGAGAGGACTCGCCATCAACATGGTGGACAGTCAGCGCAGCATGGAGATTCTCAAGACATACGAGAGGCATTTTGGCAAAAAATTGCAAGGCTGGACACGGATGATCTTGACGAAATCGAAAAAATCGCCAGCTGAGGTGATGAAGACCCAAACACTATTTCATTTTATAGCAAAATCAGTTCTGCTGTTACCTCGTTAGATATAAAGCTTGATTAAATCTACATTACAAAGACAGACGTTTACATAAATTCCCCGAAATTTGCTTTAACTTTAGTTTAATGCCAAACAGTTTTGATTCTGAGCTCTTCAAGTTGTTCCAGGAGTTTTTGAATTGGCTTGAGCTTAACAGAGTGTGCTTTGATTTAGAAGTGATCTGCCTGACAAATACCTTACATTTAATCTTGTTTAATGGTTACTGCTTTACTTGGGAATTCTGTCTGTTGTTTACTTGACTAATGAAGCATCTATTTAAATAGTGTTTTGGTCTTATGTTTGAATGGAACAGACAAGCTCAGAAAAATATGTTGGGACTTCAGAATATCTGCAAGCTGGCAGGAAATTATACGATGCATAAAACGCCACAAAGCAGCTCCAAACATTCCTCGAGCACTTTAGAATTAATGACACTTTGTATTGAGAATTATTGTGGAAAAACACAATAGAGTATTGTTGTGATGTAAAACAATGCCTTTGTACTTGAACTGCAGAAAGCATTTAAGCTTAAGC
>TCONS_00044487
TGAACAGTCCGTCATCATCAGAAGAGTTATCAAGACCGGTTAAAAAGTTAATATATCTGCGATTAAGCCATGTCAACCGACTCGTGGGCTTTAGCTGTGGACGAACAAGAGTCTACAACCAAGCCTGTTGGGAACCTGCGGATTATGGAAGCAGAAAATGCATCTTTGCATCAGAATAATGgtgatgatgaagaagatgaaAAAGAGGACAGAGCCACACAGAGTctcctgaacaagctgatcagaAGCAATCTGGTCAATAACACAAACCAGGTGGAGGTTCTTCAGAGAGACCCAAACTCACCGCTTTATTCAGTCAAGACTTTCGAGGAGCTGAGACTGAAACCTCAGTTGCTCAAAGGCGTCTATGAAATGGGCTTCAACAGACCTTCTAAAATCCAAGAGAATGCCCTTCCCATGATGCTGGCTGAACCACCTCAGAATCTGATTGCTCAGTCTCAGTCTGGCACTGGTAAAACGGCTGCATTCGTTCTGGCTATGCTCAGTCATGTGGACCCAGCCTGTAAATGGTCGCAGTGTTTGTGCATTTCCCCCACATATGAGCTGGCTCTGCAGACGGGCAAAGTCATCGAGCAGATGGGCAAATTTTATCCGGAAGTCACACTGGCATATGCAGTTCGAGGACATAGAATGGAGCGTGGCGTAAGGATCAAGGATCAGATCGTCATCGGCACACCTGGAACGGTTCTGGACTGGTGCATTAAGCTGAAACTCATAGACCCCAAAAAGATCAAAGTGTTTGTTCTGGACGAGGCCGATGTCATGATCGCCACACAGGGACACCAGGACCAGAGCATTCGCATTCAGAGAATGCTGCCCAAAGGCTGCCAGATGCTGCTTTTCTCTGCCACTTTTGAGGACTCTGTGTGGAAGTTTGCCGAGCGGGTCGTGCCTGATCCCAACATCATCAAGCTAAAACGAGAAGAGGAGACCCTGGACACTATCAAGCAGTACTACGTGCTCTGCAACAGCAAAGAAGACAAGTTCAATGCGCTCTGCAACATCTATGGAGCCATCACTATCGCACAAGCTATGATCTTTTGTCATACTAGGAAAATGGCCAACTGGCTTGCTGGCCAGATGTCTAAAGAGGGCCACCAGGTGGCGCTGCTCAGTGGAGAAATGGTGGTCGAGCAAAGAGCCGCAGTTATTGAACGCTTCAGAGACGGCAAGGAGAAAGTCCTCATCACTACTAATGTCTGTGCAAGAGGTATTGATGTTGAACAAGTGTCGGTGGTGATCAACTTTGACCTTCCCCTGGACAAAGATAGCAATCCAGACAACGAGACATACCTCCACCGGATTGGCAGGACTGGGCGGTTTGGCAAGAGAGGACTCGCCATCAACATGGTGGACAGTCAGCGCAGCATGGAGATTCTCAAGACATACGAGAGGCATTTTGATAAGAAAATTGCAAGGCTGGACACGGATGATCTTGACGAAATCGAAAAAATCGCCAGCTGAGGTGATGAAGACCCAAACACTATTTCATTTTATAGCAAAATCAGTTCTGCTGTTACCTCGTTAGATATAAAGCTTGATTAAATCTACATTACAAAGACAGACGTTTACATAAATTCCCCGAAATTTGCTTTAACTTTAGTTTAATGCCAAACAGTTTTGATTCTGAGC
>TCONS_00044488
TGAGTCAGGCGCTGGACGCGTCTCAAATCCTAGTGAACTGCCTACTTTGCGTTTATATGACACAGACGCGTTTGAATAGAGGTTGGGAACCTGCGGATTATGGAAGCAGAAAATGCATCTTTGCATCAGAATAATGGTAGTCCTGCTTTACATGCATTAAAGTgtgatgatgaagaagatgaaAAAGAGGACAGAGCCACACAGAGTctcctgaacaagctgatcagaAGCAATCTGGTCAATAACACAAACCAGGTGGAGGTTCTTCAGAGAGACCCAAACTCACCGCTTTATTCAGTCAAGACTTTCGAGGAGCTGAGACTGAAACCTCAGTTGCTCAAAGGCGTCTATGAAATGGGCTTCAACAGACCTTCTAAAATCCAAGAGAATGCCCTTCCCATGATGCTGGCTGAACCACCTCAGAATCTGATTGCTCAGTCTCAGTCTGGCACTGGTAAAACGGCTGCATTCGTTCTGGCTATGCTCAGTCATGTGGACCCAGCCTGTAAATGGTCGCAGTGTTTGTGCATTTCCCCCACATATGAGCTGGCTCTGCAGACGGGCAAAGTCATCGAGCAGATGGGCAAATTTTATCCGGAAGT

Function

symbol description
zgc:193690 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080721-12 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

Ensembl:

ensembl_id ENSDARG00000044325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044486 False 2109 mRNA 0.45 12 37095792 37113430
TCONS_00044487 False 1653 mRNA 0.47 12 37096215 37113396
TCONS_00044488 True 602 mRNA 0.47 7 37103980 37113215

Neighbor

gene id symbol gene type direction distance location
XLOC_022556 ints11 coding downstream 9824 37057603 ~ 37085968 (-)
XLOC_022555 NA coding downstream 95308 36997204 ~ 37000484 (-)
XLOC_022554 CABZ01054876.1 coding downstream 135880 36959791 ~ 36959912 (-)
XLOC_022553 acap3a coding downstream 160848 36888913 ~ 36934944 (-)
XLOC_022552 ube2j2 coding downstream 211502 36870354 ~ 36884290 (-)
XLOC_022558 CR762407.1 coding upstream 163643 37277073 ~ 37280713 (-)
XLOC_022559 mul1b coding upstream 174112 37287542 ~ 37291840 (-)
XLOC_022560 zmp:0000001088 coding upstream 299370 37412800 ~ 37432459 (-)
XLOC_022561 dnajc16 coding upstream 380102 37493532 ~ 37514493 (-)
XLOC_022562 NA coding upstream 410107 37523537 ~ 37525054 (-)
XLOC_022551 NA non-coding downstream 226548 36868045 ~ 36869244 (-)
XLOC_022550 CR926464.2 non-coding downstream 267204 36828472 ~ 36828588 (-)
XLOC_022548 BX321896.1 non-coding downstream 377297 36718375 ~ 36718495 (-)
XLOC_022566 NA non-coding upstream 607954 37721384 ~ 37724683 (-)
XLOC_022568 CU682811.2 non-coding upstream 983390 38096820 ~ 38099972 (-)
XLOC_022569 CU682811.1 non-coding upstream 1014022 38127452 ~ 38127569 (-)

Expression


Co-expression Network