XLOC_022564 (tor1l2)


Basic Information

Item Value
gene id XLOC_022564
gene name tor1l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37539068 ~ 37546696 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044496
tgtcagtcTTCATTTGTAGACAACCAGACTTTTTTCCCCATTATTTGGACCTGTTTAAGTCACTGAATCCACTGAGCCACTTTTCCTTCCATCCAATGTACTACTTGTTTGCAACCAGTAATAATAGTTTGCCTTAGTGCAAATCTTGTTTCTCTATTAAACATTTCTTTGAACAGTGCTCCCAGTAAGAACACAACTGGATCTAGGGGTATTTCTACATTTAATATCccatctatttcttttttaacatttttccaaaattcttgaattaagaacacttttgtgctgAAAAAAGGAGTATAAGCATTTTGTACGCCAATGTCTTCATCAGATACATGTTTACTATGGGCAGTATGACTTATTTTCCATTTGAGTTGGCAGTGCAACATGCAAGTGACGAATTGCCCATAGTACACACACCCTAATCTAACATGGAAAATATAGGCTTTAACAAATGTCAGTAGTGACTATTGTAACCTAAATAGCAAACTCAGAAATGAATCACAAAATTCTGTTTCTAAAATGCACACAATTCtacaatttaaatgattaatattattatcatgttTATAGTAAGATGCTTATTGTGCAAAAGGTGGTCATGGTTACAGTGACGTCAACATGCAAACCTGAAAACCAGGAAGACAAGAAATATGtgttgtcgttttttttttttagtactctATGTATGCAGTTTGCCATGTCAGCTTATTGCTAAAGGAGTGCACATTACCAGAAACGAAACACAAGAAGAAACCTGAATCATTTGCTTTAACAATGAAAGTGCAGCGTATTTTAACAGCTCTATTGCTTGTGAGTAATATAACTTCATCTTCATGTTTTCTGGAAGCCTTCACAGATGCCTTGAAGCATTCTGCAGTTTACAAATTTTTTGAAAGGGACGATTTGCTGGTTTTTGACCCTAAACGTTTGGAGAAAGATTTGAATGACTTTCTTTTTGGCCAGCACATCGCATCTAATGTTATATTAAAATCGGTATCATCATTTATGACTGACAGCAAACCAAACAAACCGCTGGTCCTCTCTCTTCATGGCACTACAGGAACCGGGAAAAATCACGTCACTAAAATTCTTGCaagaaacatttacaaaaaaggGGAAGAGAGCAAGCATGTTCAGATTTATGTTTCAGAATATAATTTCCCAGATAGAGGAAAGGTTGACTTATACACAGCTCAGCTAAGGCAGTGGATTTATGGAAATGTATCCAGCTTTCCCCGGTCCATGTTCATATTTGATGAAATGGACAAGATGCAACCACAGCTGATTGATGTCTTAAAACCTTTTCTGGACTACTCTCTGGTGAATGGAGTATCATTTCACAATGCAATCTTCATTTTTCTCAGCAATGCTGGTGGGAAAGTGATTGCTGACTTGGCTCTAGATTTTTGGAGAGAAGGGAAAAATCGGGAAGATCTGTGGATGAACAGCAGGGAGCTGGAGATTAAAATCTCTACAAATGTCTACAATGATAAGAACTGTGGATTTCTGCACACTAGTATTATAGACGAGCATCTGATTGATCACTTTATTCCTTTCCTACCTCTGGAGCTGAAGCATGTTCGCCAGTGTGTTTTGGCTGAGATGAAGCATCTGAACATCACAAAAGATGATGAACTGGCTGATGAAGTGGCCAGAGACATGCCTTACTTCCCTGAAGAAGAGAGAATATTTGCTGTTAAAGGCTGCAAGTCAGTCAGACAGAAGTTGGTGCTGCATGTTGATGAATAG

Function

symbol description
tor1l2 Predicted to enable ATP binding activity. Predicted to act upstream of or within chaperone cofactor-dependent protein refolding and endoplasmic reticulum organization. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-5 and torsion dystonia 1. Orthologous to human TOR1A (torsin family 1 member A) and TOR1B (torsin family 1 member B).

GO:

id name namespace
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0006998 nuclear envelope organization biological_process
GO:0061077 chaperone-mediated protein folding biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0031175 neuron projection development biological_process
GO:0007155 cell adhesion biological_process
GO:0072321 chaperone-mediated protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121107-3 Predicted to enable ATP binding activity. Predicted to act upstream of or within chaperone cofactor-dependent protein refolding and endoplasmic reticulum organization. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-5 and torsion dystonia 1. Orthologous to human TOR1A (torsin family 1 member A) and TOR1B (torsin family 1 member B).

Ensembl:

ensembl_id ENSDARG00000090741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044496 True 1752 mRNA 0.37 5 37539068 37546696

Neighbor

gene id symbol gene type direction distance location
XLOC_022563 tor1l1 coding downstream 2941 37530718 ~ 37536127 (-)
XLOC_022562 NA coding downstream 14014 37523537 ~ 37525054 (-)
XLOC_022561 dnajc16 coding downstream 24575 37493532 ~ 37514493 (-)
XLOC_022560 zmp:0000001088 coding downstream 106609 37412800 ~ 37432459 (-)
XLOC_022559 mul1b coding downstream 247228 37287542 ~ 37291840 (-)
XLOC_022565 tor1l3 coding upstream 19401 37566097 ~ 37575030 (-)
XLOC_022566 NA coding upstream 174688 37721384 ~ 37724683 (-)
XLOC_022567 cd40 coding upstream 276864 37823560 ~ 37835794 (-)
XLOC_022568 CU682811.2 coding upstream 550124 38096820 ~ 38099972 (-)
XLOC_022569 CU682811.1 coding upstream 580756 38127452 ~ 38127569 (-)
XLOC_022558 CR762407.1 non-coding downstream 258355 37277073 ~ 37280713 (-)
XLOC_022555 NA non-coding downstream 538584 36997204 ~ 37000484 (-)
XLOC_022554 CABZ01054876.1 non-coding downstream 579156 36959791 ~ 36959912 (-)
XLOC_022551 NA non-coding downstream 669824 36868045 ~ 36869244 (-)
XLOC_022573 NA non-coding upstream 926438 38473134 ~ 38647152 (-)
XLOC_022574 NA non-coding upstream 1257177 38803873 ~ 38807512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01538233_01543680 NA coding CI01000001 null 1538071 ~ 1543838 (+)