XLOC_022570 (pfdn4)


Basic Information

Item Value
gene id XLOC_022570
gene name pfdn4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38151393 ~ 38160024 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044501
GTCCAGAAGATGTCAGTAAGTGTTGCTAACTAAAATCCTCAAGTCTGTATGGCTGCAGCCCAAAATCCTTGCAACAGCGGATAATTTTAAGAAAACCGACTTCAAAACGCATTTAGTTAAGCCAGTAATTTAGATTCAAACATAAAACTTCATAATTTCTTTGTCAAACGTACCATATTTTCGAAGCAGCAACCGAAACACGCAACAAACACTCAAACATCCACGTGCTCCATTCAGACGCCGTTCAGGCGCGTGCACGCAGCTCGCTTCCCGTTCAAGATGGCAGCCACCATGAAGAAAGGAGTGGCAGCAGAGGATGTCAATGTAACATTTGAGGACCAGCAAAAGATAAACAAGTTTGCCAGGAACACAAATCGGATGTCTGAACTGAAAGATGAAATCGAGGCCAAAAAGAAATCTTTACAGAACTTAGAGGATGCCAGTGATGACCTCATGATGTGTGAGGATGATTCGATGCTGATCCCGTATCAGATTGGAGACGTGTTTATCAGTCACTCGCAAGAAGAGACGCAGGAGATGCTGGAGGCAGCAAAgGAAGCTCTGCAGGAAGAGATCAAGGCTCTGGAAGGTCGCGTCTCATCCATACAGGGGGTCCTGGGAGATTTAAAGGTTCAATTATACGCCAAGTTTGGAAACAACATCAACTTAGAGGCGGACGAGAGCTGAAACCTTTAGCTGGTGGACTTGACCTCATAGACTGTCCATCTCTAACAGGACAGGACATTTCTACAAATCTTGTCCGGTTTACTCCAGTGATGTCTGTTCAGTTTCACATCTTGTTACGTTTAATCAAGTTCTTGAGGTGTTGCATCCAGGTGGTTTTTGGGGGACGAATGAAATGTCCAGAATGAGAGAATTGAAAGGCACtgatgtcaaaataaaaaaaagaagaaa
>TCONS_00044502
TGGCAGCCACCATGAAGAAAGGAGTGGTATGTGTTCCCATTATCGGCTTTCTGTCTACATTCACGTTGTTTTGTTGCTCATCCCTGAGAAACGCGTTGGTGATGctgaaatatctaaaatattaaacGAAAGAGACAGCTGAGGGAAACTGAGGAcggtttattgtttattttcaccGGCTTGGATGGCTAACGTCATATTATTCGTGCCTGTCTGTTAATgagttttattGCAGCAGAGGATGTCAATGTAACATTTGAGGACCAGCAAAAGATAAACAAGTTTGCCAGGAACACAAATCGGATGTCTGAACTGAAAGATGAAATCGAGGCCAAAAAGAAATCTTTACAGAACTTAGAGGATGCCAGTGATGACCTCATGATGTGTGAGGATGATTCGATGCTGATCCCGTATCAGATTGGAGACGTGTTTATCAGTCACTCGCAAGAAGAGACGCAGGAGATGCTGGAGGCAGCAAAgGAAGCTCTGCAGGAAGAGATCAAGGCTCTGGAAGGTCGCGTCTCATCCATACAGGGGGTCCTGGGAGATTTAAAGGTTCAATTATACGCCAAGTTTGGAAACAACATCAACTTAGAGGCGGACGAGAGCTGAAACCTTTAGCTGGTGGACTTGACCTCATAGACTGTCCATCTCTAACAGGACAGGACATTTCTACAAATCTTGTCCGGTTTACTCCAGTGATGTCTGTTCAGTTTCACATCTTGTTACGTTTAATCAAGTTCTTGAGGTGTTGCATCCAGGTGGTTTTTGGGGGACGAATGAAATGTCCAGAATGAGAGAATTGAAAGGCACtgatg

Function

symbol description
pfdn4 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN4 (prefoldin subunit 4).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-100922-122 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN4 (prefoldin subunit 4).

Ensembl:

ensembl_id ENSDARG00000061228

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044501 False 915 mRNA 0.44 4 38151393 38160024
TCONS_00044502 True 818 processed_transcript 0.44 4 38151415 38159744

Neighbor

gene id symbol gene type direction distance location
XLOC_022569 CU682811.1 coding downstream 23824 38127452 ~ 38127569 (-)
XLOC_022568 CU682811.2 coding downstream 51421 38096820 ~ 38099972 (-)
XLOC_022567 cd40 coding downstream 315599 37823560 ~ 37835794 (-)
XLOC_022566 NA coding downstream 426710 37721384 ~ 37724683 (-)
XLOC_022565 tor1l3 coding downstream 576363 37566097 ~ 37575030 (-)
XLOC_022571 FO904868.2 coding upstream 169496 38329520 ~ 38330746 (-)
XLOC_022572 tshz2 coding upstream 219603 38379627 ~ 38497756 (-)
XLOC_022573 NA coding upstream 313110 38473134 ~ 38647152 (-)
XLOC_022574 NA coding upstream 643849 38803873 ~ 38807512 (-)
XLOC_022575 NA coding upstream 699551 38859575 ~ 38864855 (-)
XLOC_022562 NA non-coding downstream 626339 37523537 ~ 37525054 (-)
XLOC_022558 CR762407.1 non-coding downstream 870680 37277073 ~ 37280713 (-)
XLOC_022576 NA non-coding upstream 787803 38947827 ~ 38949910 (-)
XLOC_022577 NA non-coding upstream 851931 39011955 ~ 39012362 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01209204_01212045 PFDN4 coding CI01000001 null 1209204 ~ 1212252 (+)