XLOC_022572 (tshz2)


Basic Information

Item Value
gene id XLOC_022572
gene name tshz2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38379627 ~ 38497756 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044504
CTCCAGCATACAGACAGTACGAGGCTGCTCTTGTGGGCTGTCTCATGTTTTCTCCGGCCTCTGTCTCTTTAATAAACTCGTGGTTATCTAGTGTAACAAATGTCTCGCTGCCATCATCAAGtccagaggaggaggaggaggaggagtttttaatgttcagtttgttcTATGGATCGATGTTTGCTGCTGGCAtcgccgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgatatacaCTATTTTTTTCTGCCCTTTTCCTACTACGTTTCATACGAGACCGGGAGTCTAAGCGATTGACAGCGTTCGTCCTTTTGGCTTtggaaacaaaaaaagaaaagaagaagaagaagagacggaaagaaaagcaaagcaaaacaatccGCCATAGATCTAGGACGGAGAGGTATATTAAAAAGAGACACCTGATTTTCTGGacagcgtttgtgagatactggATTGTACGGGACTGAAGTGCTTTAGAGAGTCGCTATTGCGTGTGTATGGACTATATCAGAGCGCTTATACTGAATTTCACCTGGGCTCCGTTTCACTGTACGTGAACTAAAGAGAGAGTTGAACATGCCAAGGAGGAAACAGCAGGCACCCAAAAGGGCTGCGGCATACGAGCCAGATGACGAGGTCGGTGTCCAAGAGTCGATCGAAGAGGAGGAGGGCGAAAATGCAATGCAGACCGAGGAGGAGAATTCAGAAAGGCCCACTTCCAAGGACAAAGACGACAAAGACATAGACAACAAAAGCAGCTACAGCTTTCAGAACTCTCCGGTCAGTGTCCTCTCCAACCAGGAGGTTGAGCTGGAATCCCGGCTGAGCGATGGCAGTGACAGACTGTCTGACTTTAAGACCTCACCACCAGGAAGTCAGAAGGACACCGAGACCCAGAGCTCCAAGCTGAAGGATGACATGCACAGTAGCCTGGAGAAAATGAGGGCTGCCTATGCCAACTTCCTTTCAGACTCCTACTGGTCAAAGATTGGACTAGATTTGAAGGTTGCTAACACTGGCAGCAAAGCAAACTGTGACAGCACCAACGGGAGCACCAAGAGTGAGTTTGACTGGCACCAGGACGCACTTTCCAAAACCCTGCAGCAAACACTGTCCCCGAAACCCGTGTCAAAGCCTAATCTATTCAGCTCCGTCCACCTGTACAGGCAAAATAGCAAAGCGTGCGGCGCGGTCTTCACAGGGGCCAGTCGATTTCGCTGCAAGGACTGCAGTGCAGCGTATGACACCCTGGTGGAGTTGACGGTGCACATGAACAAGAGCGGCCACTATCAGGATGACAACCATAGCAGGCAAAACATCGCCTCCACTTCGTCGTCAAAGAACCGAAAGAGGAACCTTCAGGACATGGAAGGCAAGGAAGATGCGCAAAAAGTGCTCAAGTGCATGTTCTGCGGCCACTCGTTCGACTCTCTGCAAGACCTGAGTGTGCACATGATCAAAACGAAGCATTACCAGAAAGTGCCTTTGAAAGAACCAATTCCAGTAATCACTCCCAAACTAATCCCACCAGCAAAGAAACGTGCATTTGAAGCCACAAGGCCTTGTTCGCCCGACTCAACCACAGGGGTTTCAGGTTACACCGATGCCCAAAGGTCGTCCGGCCTTGCCAATGCTCCCAACAACCGCTACGGCTATCAGAACGGTGCTAGTTACACATGGCAGTTTGAGACGTGCAAATCTCAGATCCTGAAGTGCATGGAGTGCGGAAGCTCCCATGATACTCTCCAGCAGCTCACCACTCACATGATGGTCACCGGGCACTTCATTAAAGTGACAAACTCAGCCTCCAAAAAAGGCAAACAGCTAGCCCTCGATCCTCTAGCAATAGAGAAAATGCAGACTCTTGCTGAACCCACAGTGAACGAACTTGAAGGAGAAAAGGTTTCTCCAAAAAGCACAGCATCCGGTGATTCGGAGAGGGCTACCCCAAGAGATATGTCACCGGATAAAGCTGAGAAAAACGAGGACAAGGATGACAAACAAGATGAAGAGGAACGGAAGCCCACTGACGGTAATTTTAAGTATCCGTACTTGCGGGAGGAAGACCTTGAGCAGCAGGGGTCCTCCGGAGGGGGGGACATTCTCAAGTCTTTAGCAAACACGGTGGCTTCGGCAATCAATAAAGCTCAAACAGGGACCCCCAGCTGGAGCGCTTACCCCAGCATTCATGCGGCGTACCAGCTATCAGGGGTGATCAAGACCGCCTCCTTTTCCCCTTCTCCTCCCATCCAGCTCAAGCAGAATCTTAACCATAAGCACAGACCCATCGCTCCCAAGGGGAAGTTCTATCAGGCACTTCGGGGACTTGAAAGTTTCCAGGGACATCACAATTCGGACATCAAAAAGGAAAGGGGTGGCGCATCTGACGGCAAAGAGAGCCAGAGCAGTAGGTTTGATCTGGTGGAGAATGATGACAGTGATTGTCAAGATGATTCCTCCTCCTCTTCAAAGCTGGATGCAGACTGTGTAAGTGAAGAGAATGACACAATCAAAGGGAAGTTGAGCCCGGCTTTCTCTGACAGAGGGAACCCGTCACCTAGCCCCCCTGCCAGCAATGGGCACAGCACTTCTTCAGAGCTTGTCAACGATTCCCAGGAAGTCCTTAGCATAAACCCTCTAAGCGCACTTCAGTCTGTCTTAAACAATCATTTGGGTAAAGCAAACAAGCCCAGGCCCGAAAGCATCCTCTCCCATCGCACTCAATCCATCTTTTCAGAACTGAGTAGAGGTTTAGAGAAACCGCTCTCAGCATCTGCCGCCATCAGGGCCAGCAACAGCTTCATGTTCACAAATGACGACCAGCCAATAGACTTgaccaaacacaaacacaacaaaccAAACTCTTCCCTCTTACTGCAGTCCTCCACTCCGATGCACCAGAAACATGCACTCTCTGACATCGCTGACATGGTTAAGGTTCTTCCAAAAGCCACAACTCCAAAACCTCCGATGCCAGCCAGAATGCCGGTCATGAAGCTGGAGACTGACGTGCGCAGATTTGAAGATGTCTCCAGCGAGATGTACTCAGTCCATAAGCGCAAAGGTCGACAGTCCAACTGGAACCCACAACATCTGCTCATCCTTCAAGCCCAATTCGCTTCCAGCCTTTTTCAGACTTCCGAGGGCAAGTATCTGCTCTCAGACCTGGGCCCTCAGGAGAGGATGCACATCTCTAAGTTCACCGGGCTTTCCATGACCACCATCAGCCACTGGCTGGCCAACGTCAAGTACCAGCTTAGGAAAACTGGAGGAACCAAGTTTTTGAAGAACATGGACACCGGCCATCCGGTTTTCTACTGCAATGACTGTGCATCACAGTTCAGAACGCCATCTGCGTTTATATCCCACCTCGAGAACCACCTGGGTTTCCAAATCAAGGACATGAACAAACTACCTATAGAACACCCGACTAAAATAACAGAGCCCGAACTTTCAAAGGTGCTCACGATCCGGCCCACGGATTCGCAGATCACGGAAGAGGAATCTGACTCAAAGTTCAAATGCAAGCTCTGCAGTCGGACATTTGCCAGCAATCACGCGGTCAAACTTCACTTGAGTAAAACTCACAGTAAATCCCCTGAGAATCATTCACAGTTTGTGGAAATGGACAAAGAGTAG
>TCONS_00045089
ggaggagtttttaatgttcagtttgttcTATGGATCGATGTTTGCTGCTGGCAtcgccgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgatatacaCTATTTTTTTCTGCCCTTTTCCTACTACGTTTCATACGAGACCGGGAGTCTAAGCGATTGACAGCGTTCGTCCTTTTGGCTTtggaaacaaaaaaagaaaagaagaagaagaagagacggaaagaaaagcaaagcaaaacaatccGCCATAGATCTAGGACGGAGAGGTATATTAAAAAGAGACACCTGATTTTCTGGacagcgtttgtgagatactggATTGTACGGGACTGAAGTGCTTTAGAGAGTCGCTATTGCGTGTGTATGGACTATATCAGAGCGCTTATACTGAATTTCACCTGGGCTCCGTTTCACTGTACGTGAACTAAAGAGAGAGTTGAACATGCCAAGGAGGAAACAGCAGGCACCCAAAAGGGCTGCGGGCCGTGTTGACTAAGATCCTCCCGCCTCATTGGTCAGCAACACCCAGCGGGCCGCAGTAGAGGTCAGATGTGTATCAAGACGCCTCCAGACACGAAACACCAG
>TCONS_00045090
TTACACCGAAGCCTTCTTTATTATTTCTTCTTCTCAGCATCTCCGCCTAAACTCCAGCATACAGACAGTACGAGGCTGCTCTTGTGGGCTGTCTCATGTTTTCTCCGGCCTCTGTCTCTTTAATAAACTCGTGGTTATCTAGTGTAACAAATGTCTCGCTGCCATCATCAAGtccagaggaggaggaggaggaggagtttttaatgttcagtttgttcTATGGATCGATGTTTGCTGCTGGCAtcgccgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgatatacaCTATTTTTTTCTGCCCTTTTCCTACTACGTTTCATACGAGACCGGGAGTCTAAGCGATTGACAGCGTTCGTCCTTTTGGCTTtggaaacaaaaaaagaaaagaagaagaagaagagacggaaagaaaagcaaagcaaaacaatccGCCATAGATCTAGGACGGAGAGGTATATTAAAAAGAGACACCTGATTTTCTGGacagcgtttgtgagatactggATTGTACGGGACTGAAGTGCTTTAGAGAGTCGCTATTGCGTGTGTATGGACTATATCAGAGCGCTTATACTGAATTTCACCTGGGCTCCGTTTCACTGTACGTGAACTAAAGAGAGAGTTGAACATGCCAAGGAGGAAACAGCAGGCACCCAAAAGGGCTGCGGATGATGTGATCATGAGGGAACCAGACAGACTTGGTGTACACATTACATGAGATacccatgtttgtttttttgcctgCTGAGACTGCATGGGACGATGACCATTTTCAAGGTAGACATTTCAAGCTGAAggattttttattaacatttgtttttaggaaaac
>TCONS_00045091
TCGTGGTTATCTAGTGTAACAAATGTCTCGCTGCCATCATCAAGtccagaggaggaggaggaggaggagtttttaatgttcagtttgttcTATGGATCGATGTTTGCTGCTGGCAtcgccgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgatatacaCTATTTTTTTCTGCCCTTTTCCTACTACGTTTCATACGAGACCGGGAGTCTAAGCGATTGACAGCGTTCGTCCTTTTGGCTTtggaaacaaaaaaagaaaagaagaagaagaagagacggaaagaaaagcaaagcaaaacaatccGCCATAGATCTAGGACGGAGAGGTATATTAAAAAGAGACACCTGATTTTCTGGacagcgtttgtgagatactggATTGTACGGGACTGAAGTGCTTTAGAGAGTCGCTATTGCGTGTGTATGGACTATATCAGAGCGCTTATACTGAATTTCACCTGGGCTCCGTTTCACTGTACGTGAACTAAAGAGAGAGTTGAACATGCCAAGGAGGAAACAGCAGGCACCCAAAAGGGCTGCGGAAAATTAACAGCTCGGCGCAGGAGAGATGTGGGCCCGCAG

Function

symbol description
tshz2 Predicted to enable DNA binding activity and metal ion binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; liver primordium; nervous system; neural tube; and pectoral fin bud.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000079201

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044504 False 3643 mRNA 0.50 2 38379627 38497705
TCONS_00045089 False 584 lncRNA 0.47 2 38457596 38497566
TCONS_00045090 False 832 lncRNA 0.44 2 38487415 38497756
TCONS_00045091 True 583 lncRNA 0.46 2 38494603 38497628

Neighbor

gene id symbol gene type direction distance location
XLOC_022571 FO904868.2 coding downstream 48881 38329520 ~ 38330746 (-)
XLOC_022570 pfdn4 coding downstream 219603 38151393 ~ 38160024 (-)
XLOC_022569 CU682811.1 coding downstream 252058 38127452 ~ 38127569 (-)
XLOC_022568 CU682811.2 coding downstream 279655 38096820 ~ 38099972 (-)
XLOC_022567 cd40 coding downstream 543833 37823560 ~ 37835794 (-)
XLOC_022574 NA coding upstream 306117 38803873 ~ 38807512 (-)
XLOC_022575 NA coding upstream 361819 38859575 ~ 38864855 (-)
XLOC_022576 NA coding upstream 450071 38947827 ~ 38949910 (-)
XLOC_022577 NA coding upstream 514199 39011955 ~ 39012362 (-)
XLOC_022578 NA coding upstream 917274 39415030 ~ 39455122 (-)
XLOC_022566 NA non-coding downstream 654944 37721384 ~ 37724683 (-)
XLOC_022562 NA non-coding downstream 854573 37523537 ~ 37525054 (-)
XLOC_022558 CR762407.1 non-coding downstream 1098914 37277073 ~ 37280713 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01030701_01030988 NA coding CI01000001 null 1030254 ~ 1031164 (-)