XLOC_022573


Basic Information

Item Value
gene id XLOC_022573
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38473134 ~ 38647152 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044750
cAGGTTTGTTGGTCTTGCTGAGCAACGTTTGAATAACAGATGCTTCGGGCCTTTTCAATGGGATCAGTACGGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGACCATCTGACTGCAAATTCTGTAAGTGAGGCACGGTGTGATGGAGAGAGCacaaagagacttttatttcatAATGAGGCAGTCTGCTATACTGGAGCTGCATCGAAAATGCAGAAAAAGATTGAATTGAAAAAATGAGTTGCCTGAAGATTGTTCTGAATTTCTTGTGTCTTATGAAGTTTTAT
>TCONS_00045093
CGATAGTTGGTGTTACCTGCCataaaacagaaaaagaagaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGgaactgcgtcacaatatggGGAAAAAATGGTTGCAGGttctggttcatgtggactttttaaagACCATCTGACTGCAAATTCTGTAAGTGAGGCACGGTGTGATGGAGAGAGCacaaagagacttttatttcatAATGAGGCAGTCTGCTATACTGGAGCTGCATCGAAAATGTCGCGGTatcagcagtctcaggagagaaccccagacttccctctccccagacacttcctccagatCCTCTAGAAGGATCTTAAgatgttcccaggccagctgag
>TCONS_00045092
CGATAGTTGGTGTTACCTGCCataaaacagaaaaagaagaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATACCATCTGACTGCAAATTCTGTAAGTGAGGCACGGTGTGATGGAGAGAGCacaaagagacttttatttcatAATGAGGCAGTCTGCTATACTGGAGCTGCATCGAAAATGTCGCGGTatcagcagtctcaggagagaaccccagacttccctctccccagacacttcctccagatCCTCTAGAAGGATCTTAAgatgttcccaggccagctgag
>TCONS_00045094
gaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGACCATCTGACTGCAAATTCTGTAAGTGAGGCACGGTGTGATGGAGAGAGCacaaagagacttttatttcatAATGAGGCAGTCTGCTATACTGGAGCTGCATCGAAAATG
>TCONS_00045095
GCAGATTGTATTTATAGAGTGGTGCCATTTTTTTAACAACATGGAGAAAACATAaagGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGgaactgcgtcacaatatggGGAAAAAATGGTTGCAGGttctggttcatgtggactttttaaagTGATTATGAGCACCTCGGATGGCCTGTCATGTCCTCTCTCCATAATAACCTCAGCAAATGCATAACCCATGGAGACGGTTCATTAGCTTGTCAAACACACGTCTCTCCGGTCGCAGTGGTCTCGCCGTGGCCTCGGGAGCACACCAGGTCTCGCTTGCATCCAAGGTGATCAAACCTACGTCAGCCGCACCTGCCGGTTCCCCGGAGAAAACACACCAACAACACCATCCACAGGGAGACACACACTCAATCATCTTATCTCTCTTTGCCCGAGGAAAGTATCAGAAAACCCGGTGAGCCTTTGAGTTTGATTCCGACACACAGATTGATCAAAGAAACAGACAAGTGTTACTCAATACTGCTTCCCTCCGTGAGGATATCTGCTTCTCTAATACTCAGGTTTGACAGTAAATCACCTCTAACAAACAACTCTACAATTTCATACGCCATTTTTTCCGACAGCAGATCTGTCCGTCATGGTTTGCCTCCAGGGACGATCTCTAACCTCTGCTGTTGTTAACAAATGACCCTGTAAGGGTTTTTTTGGTGCAGTGATTCACACATGCTGCTCTTCTAATGGTTTTGTTTGTGCACAAAATACTCTTTAGTGAATGAACTGGTGCAGAAATCAGATTTACTCAAGAACATGGAGTGTGGCACTATTACGGATTAAAAACAGAATAGTTTTGGCACATTTGGTGCATCATTTGCACAGAAACAGTATTTGAGGGGTCTGAAAATGTAAActtgcaaagatgttttaaaGTGAAAATGTATTGTACAAAAACAATGAAAG
>TCONS_00045096
CGATAGTTGGTGTTACCTGCCataaaacagaaaaagaagaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGgaactgcgtcacaatatggGGAAAAAATGGTTGCAGGttctggttcatgtggactttttaaagTGATTATGAGCACCTCGGATGGCCTGTCATGTCCTCTCTCCATAATAACCTCAGCAAATGCATAACCCATGGAGACGGTTCATTAGCTTGTCAAACACACGTCTCTCCGGTCGCAGTGGTCTCGCCGTGGCCTCGGGAGCACACCAGGTCTCGCTTGCATCCAAGGTGATCAAACCTACGTCAGCCGCACCTGCCGGTTCCCCGGAGAAAACACACCAACAACACCATCCACAGGGAGACACACACTCAATCATCTTATCTCTCTTTGCCCGAGGAAAGTATCAGAAAACCCGGTGAGCCTTTGAGTTTGATTCCGACACACAGATTGATCAAAGAAACAGACAAGTGTTACTCAATACTGCTTCCCTCCGTGAGGATATCTGCTTCTCTAATACTCAGGTTTGACAGTAAATCACCTCTAACAAACAACTCTACAATTTCATACGCCATTTTTTCCGACAGCAGATCTGTCCGTCATGGTTTGCCTCCAGGGACGATCTCTAACCTCTGCTGTTGTTAACAAATGACCCTGTAAGGGTTTTTTTGGTGCAGTGATTCACACATGCTGCTCTTCTAATGGTTTTGTTTGTGCACAAAATACTCTTTAGTGAATGAACTGGTGCAGAAATCAGATTTACTCAAGAACATGGAGTGTGGCACTATTACGGATTAAAAACAGAATAGTTTTGGCACATTTGGTGCATCATTTGCACAGAAACAGTATTTGAGGGGTCTGAAAATGTAAActtgcaaagatgttttaaaGTGAAAATGTATTGTACAAAAACAATGAAAG
>TCONS_00045097
CGATAGTTGGTGTTACCTGCCataaaacagaaaaagaagaagaatgaaGCGATGTCATTTTGGAGGGAAGCAACAAAAGAAGCACCAGTTAACCTGTTGACCCAGCGGTGATATGAAGAAGTCTGCATAACCAGTGGATCTGATGGTATGATCTGACGGGGGGCTGTCAGTGCTGAGTGAACCCCTCGAGCCCAGATCAGGACAGGAGCACTTTTGAGGAAGGACAGAGACAGGGATGCTCATGGATGGAAGGgaactgcgtcacaatatggGGAAAAAATGGTTGCAGGttctggttcatgtggactttttaaagAGGCCAACTGTATTATCACCTGTGCAGTATAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044750 False 421 lncRNA 0.45 5 38473134 38647152
TCONS_00045093 False 530 lncRNA 0.48 6 38508475 38634582
TCONS_00045092 False 358 lncRNA 0.46 4 38508475 38634582
TCONS_00045094 False 325 lncRNA 0.48 4 38516743 38634544
TCONS_00045095 False 1082 lncRNA 0.45 5 38599127 38634319
TCONS_00045096 False 1112 lncRNA 0.45 5 38599127 38634582
TCONS_00045097 True 348 lncRNA 0.47 5 38599963 38634582

Neighbor

gene id symbol gene type direction distance location
XLOC_022571 FO904868.2 coding downstream 142388 38329520 ~ 38330746 (-)
XLOC_022570 pfdn4 coding downstream 313110 38151393 ~ 38160024 (-)
XLOC_022569 CU682811.1 coding downstream 345565 38127452 ~ 38127569 (-)
XLOC_022568 CU682811.2 coding downstream 373162 38096820 ~ 38099972 (-)
XLOC_022567 cd40 coding downstream 637340 37823560 ~ 37835794 (-)
XLOC_022574 NA coding upstream 156721 38803873 ~ 38807512 (-)
XLOC_022575 NA coding upstream 212423 38859575 ~ 38864855 (-)
XLOC_022576 NA coding upstream 300675 38947827 ~ 38949910 (-)
XLOC_022577 NA coding upstream 364803 39011955 ~ 39012362 (-)
XLOC_022578 NA coding upstream 767878 39415030 ~ 39455122 (-)
XLOC_022566 NA non-coding downstream 748451 37721384 ~ 37724683 (-)
XLOC_022562 NA non-coding downstream 948080 37523537 ~ 37525054 (-)
XLOC_022558 CR762407.1 non-coding downstream 1192421 37277073 ~ 37280713 (-)

Expression


Co-expression Network