XLOC_022576


Basic Information

Item Value
gene id XLOC_022576
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38947827 ~ 38949910 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045098
gttttggaaaagtcatccTTGGTTTTATTCTCAAAATATCAGAACGGAAGgggaacaaacaaaaaagcaacatttacaaaaagtctacactGTAAACAAGCCTAAAACAGACTCAATATTTGAACAATCATACAGACATGACCCCATTTAACCAAGATCTGACACCacctttttttttaacatctagGGAAAAAGGCACAACTTGGTAAATGCATATTTGAAAGAGAATGTACAGGAGGAGTCTGCCTATTCTGAACAAGTGTTGTGCAAAGTGTCTGGCGATACATTCATTATATTACAGAAATCAGCAGGTTATAGGAGCACAAATGCAACCATAACTCCAAAcacaatgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagacagacatcTAAATGAGGTAGAAATTTGACCAGCGTAAAGTTTTACGGTTTAGATACTCTGCGTGCATACAGAAAAAGTTCATTCCTCTTACTAAAGAAAGAACGCATGGCTACGATCTCGAAAACATGTTCCCACAACAATCAATACACATTTGGGTAGTAAACCATGACTTTTTCCCAGAAAAAGAATGACTACTTACTCCTTTTGGGACCAGATGTACATGCCTGCTTAGCTCATAATTATAAAAAGCATGGTAAATTTACAGATTTCTAAAACTCAGTGGGTCCTAAAACTGTAGAGCAAGCAAATGAGGAGTCAAACAAAGGttcataaaagaaaacaaatggcaTGAGCCTGGTCTAGATCTTAGCAGAATGAGGAAAAATAAAGTGCAAGGAATGATTAGGCATTTCAGCATTAAACTGGCCTTTTGAACTCCTATCAAAGGTCTTAAATGAAAGCAACAATCTAATATTTGAAATGGACCACTGAAAGCATGGAAACTCCCAAATTACTTAATGAAAAAGCTATAgctaaatgcaaaaatatagcATATTTTGGTCttgataaaatatgaaatccAAAAAGGCCTTTGATACAATCTTGTGGTATCCTTGGCGAGGCCAAGGAAAAATTAAGGAGaacaagagaaaaaataaaacaaaaaagcactCCAAGACAGGCACTTAGCGAAATAATTTTTGGTATTAAGCGCAGAAAGAAACTATATTGACAGTCGAAAAACTCTTAATAACTTAGTGAAATTGAAATccagtttcaaaacaaacatctATACTAGAACTACTCACTATGTTCATCAATGAAACCGTAGCCTTCAGTAGATTGTGTGGAACGGTCGATTCGTTCTTCAACGCACATATTCCACAAATACCTTTGTCTGGCATCAATGCCACAGATGTAACTGCGAATAATGACCTACCAACAAAAAGAACCATGAGTAGTCGAGTAGAGATGAACACGATGTTAACTTTTAAAACATTGAGATCTCAGGTCACCTGTGGCTGAGATCCTCCTGAGGGTCATAGAGCGGAGCCCAATGCAACTCGCAAAAAGAGTGTCCGATCACTAATGAGACTGCTCTGGAATAAAGCTATTTCAAGTAAGACTTACATTCAACTTCTAGAAACATAACAGACAAAATACCCGCATATAttagagagaaagaaaaaggaCTACAGTAGTTAGATCAGATTCAACTAGAAGCAACTGCTAGCATGTAAGAGTCCTAAGAGGAAGGCGTAGCCCGTTTTAGGGTGTAGGCTCATTTAACAAGGGTATTTGCAAAAGTTCTTAAAAGCAATGTTACATGTATGACTTGATTGTACCAACTAAGGACCGAATTAATAAATAGTCCAGTTCCTAACATTCCAACAGGCTTGTAAGCCAATCAGCACAACATGAACCGTTGGTTTGGGAACAACTGGGAAGTCTTTTCACTTTTTAATTCACTTTACCCTCCTCCATGAAATGTGGAAACTTTGCTATGCTTTCAGAGCCATTCTTTTCCATTTCTGCAACTGTGCCAGGGATAGGGATGCCACCATTTTGGATGACTGAAATTTCATTGGTCTTCATGGTCAGCCCGTTT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001743 optic placode formation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0016477 cell migration biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0046619 optic placode formation involved in camera-type eye formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048870 cell motility biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0009967 positive regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0040011 locomotion biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0016331 morphogenesis of embryonic epithelium biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0021501 prechordal plate formation biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0060322 head development biological_process
GO:0090504 epiboly biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045098 True 2009 lncRNA 0.37 2 38947827 38949910

Neighbor

gene id symbol gene type direction distance location
XLOC_022575 NA coding downstream 82972 38859575 ~ 38864855 (-)
XLOC_022574 NA coding downstream 140315 38803873 ~ 38807512 (-)
XLOC_022573 NA coding downstream 300675 38473134 ~ 38647152 (-)
XLOC_022572 tshz2 coding downstream 450071 38379627 ~ 38497756 (-)
XLOC_022571 FO904868.2 coding downstream 617081 38329520 ~ 38330746 (-)
XLOC_022577 NA coding upstream 62045 39011955 ~ 39012362 (-)
XLOC_022578 NA coding upstream 465120 39415030 ~ 39455122 (-)
XLOC_022579 NA coding upstream 578060 39527970 ~ 39534894 (-)
XLOC_022580 vwa1 coding upstream 682487 39632397 ~ 39666658 (-)
XLOC_022581 htr6 coding upstream 781055 39730965 ~ 39738055 (-)
XLOC_022569 CU682811.1 non-coding downstream 820258 38127452 ~ 38127569 (-)
XLOC_022568 CU682811.2 non-coding downstream 847855 38096820 ~ 38099972 (-)
XLOC_022586 NA non-coding upstream 990330 39940240 ~ 39942116 (-)
XLOC_022587 CU657980.2 non-coding upstream 994742 39944652 ~ 39945578 (-)

Expression


Co-expression Network