XLOC_022587 (CU657980.2)


Basic Information

Item Value
gene id XLOC_022587
gene name CU657980.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39944652 ~ 39945578 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044515
ATGACTGAAGAGTACACAACTCTCGATGATGAGCCAGAAGATGAACTCTGCCGGAAAGATGCGGTCATCAAATTCGGATCCATTGTTATTCCACTCTTTTTTGCTCTTCTGGTTGTGTTTAGCTGCGTTGGTAACACGTTGGTTCTGGTCATCCTGGTGCTGTATGAGAAGCTTAAATCCCTGATCAACCTCCTGATTCTCAATTTAGCTCTGTCAGATCtgctcttcacttttggacttccTTTCTGGGCTTCGTACTTCATCCATGGTTGGACGTTTGGAGAGATTGGCTGTAAAGCGGTCAAGTTTCTGTTCTACGTGGGCTTTTACAGCAGCGTGTTGTTCTTAACTCTAATGACCATTCAGCGCTACATGGCAGTGGTTCATCCTCTGTCCGACTGGAAGAAACACAGATGTTTTTCAGTTGCGCCATTTATCATTTGGATTCTAAGTGGAACAGCTGCGCTGTCAGTCTCACTTCGCAGCAAAGTCTTAATACACGATGATAACCTTTACTGTGAATTTGACAGTATAAAAGTAAAACATGTCGCCGTTTACTCACAAAACATTTTCTTCTTGATGGCGTTTTGCATCATGGGATTTTGCCATGCCAGAATGTTTCAGGTAATAACCCAATCTCAATCGAGACGTCGACGGAAAACTATCAATCTCATATTTTGCATAGGCATAGCGTTCTTCATCGGCTGGGTTCCATACAACATTGTTATGCTCTTGAAAACTTTACAGGATTACGCTTTGCCGCCATTCTTAATCTGTAGTGTCTCCATTCATCTTGACTATGCATTTTATGCTTGCCGTCTATTGGCGTTTTCACACTGCTGCCTAAACCCAGTGCTTTATACTTTAATTGGAGAAAGATTCCAGAAACATTTACGAACATTACCcaagaaaatatgtttaaaataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000087978

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044515 True 927 unprocessed_pseudogene 0.42 1 39944652 39945578

Neighbor

gene id symbol gene type direction distance location
XLOC_022586 NA coding downstream 2536 39940240 ~ 39942116 (-)
XLOC_022585 ppp1r14c coding downstream 95497 39807857 ~ 39849155 (-)
XLOC_022584 IYD coding downstream 160284 39774931 ~ 39784368 (-)
XLOC_022583 SIKE1 coding downstream 172545 39755641 ~ 39772107 (-)
XLOC_022582 micos10 coding downstream 193418 39744369 ~ 39751234 (-)
XLOC_022588 CU657980.1 coding upstream 5975 39951553 ~ 39952406 (-)
XLOC_022589 xcr1a.1 coding upstream 12588 39958166 ~ 39959784 (-)
XLOC_022590 tgm1l2 coding upstream 239803 40185381 ~ 40194732 (-)
XLOC_022591 tgm1l3 coding upstream 289024 40234602 ~ 40250886 (-)
XLOC_022592 CABZ01067002.1 coding upstream 311655 40257233 ~ 40296806 (-)
XLOC_022579 NA non-coding downstream 409758 39527970 ~ 39534894 (-)
XLOC_022578 NA non-coding downstream 489530 39415030 ~ 39455122 (-)
XLOC_022577 NA non-coding downstream 932290 39011955 ~ 39012362 (-)
XLOC_022576 NA non-coding downstream 994742 38947827 ~ 38949910 (-)
XLOC_022593 NA non-coding upstream 433075 40378653 ~ 40407945 (-)
XLOC_022594 NA non-coding upstream 514374 40459952 ~ 40506113 (-)
XLOC_022596 CR381701.1 non-coding upstream 647239 40592817 ~ 40592934 (-)
XLOC_022607 NA non-coding upstream 1050873 40996451 ~ 40999225 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_00353909_00354838 NA coding CI01000001 null 353909 ~ 354838 (+)