XLOC_022588 (CU657980.1)


Basic Information

Item Value
gene id XLOC_022588
gene name CU657980.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39951553 ~ 39952406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044516
ATGACTGATGAGAACACAACATATGACTATGATGATTACTATGAGGACCAGTTGTGCCGCAAAGACGACGTGGTCAAATTTGGATCCATTATTATCCCGCTGTTTTTCTCTATAGTGGTTGTGATGAGCTGCATTGGGAACATCCTGGTCTTGATCATCCTGGCGCTTTACGAGAATCTGAAATCCCTGACCAATGTGTTCATCATCCATTTATCGGTATCAAATCTGCTGTTCACGTTTGGTCTTCCATTCTGGGCTTCGTACTTCATCCATGGTTGGACGTTTGGAGAGATTGGCTGTAAAGCGGTCAAGTTTCTGTTCTACGTGGGCTTTTACAGCAGCGTGATGTTCTTGACTCTCATGACCATTCAGCGCTACATGGCAGTGGTTCATCCTTTGTCCGACTGGGAGAAATGCAGATGCTTTTCAGTCGCTCCCATTATCATTTGGATGATGAGTGGAACGGCTGCGCTGGTTGGTGCACATTATAGCAAAATCCTGAAAGATCTGAACAACACATACTGTGAATATGAAAGTATTAAAGTCAAATCAGGCATTGCTTATTATCAGAACGCTTTTTTCTTCATTGCATTTATATTTGTGTGGTTTTGCTATGGCCGAATGTGTTGGGCgataacaaaatatcacaatcGTGAGACACACAGAACTGTTAGACTAACATTTCTCATTGCACTGTTGCTATTTTTCGGTTGGACTCCATATAACATTGCTATGTTCCTGAGATCTCTGACTGATCAGAATATATATCCATTTACACTCTGTGAAGTAAGCAAAACAGTCGACTACGCATATTACATTTGCCGACTGATTGCTTTCTCACACTGTAGCGTCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000054846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044516 True 854 unprocessed_pseudogene 0.42 1 39951553 39952406

Neighbor

gene id symbol gene type direction distance location
XLOC_022587 CU657980.2 coding downstream 5975 39944652 ~ 39945578 (-)
XLOC_022586 NA coding downstream 9437 39940240 ~ 39942116 (-)
XLOC_022585 ppp1r14c coding downstream 102398 39807857 ~ 39849155 (-)
XLOC_022584 IYD coding downstream 167185 39774931 ~ 39784368 (-)
XLOC_022583 SIKE1 coding downstream 179446 39755641 ~ 39772107 (-)
XLOC_022589 xcr1a.1 coding upstream 5760 39958166 ~ 39959784 (-)
XLOC_022590 tgm1l2 coding upstream 232975 40185381 ~ 40194732 (-)
XLOC_022591 tgm1l3 coding upstream 282196 40234602 ~ 40250886 (-)
XLOC_022592 CABZ01067002.1 coding upstream 304827 40257233 ~ 40296806 (-)
XLOC_022593 NA coding upstream 426247 40378653 ~ 40407945 (-)
XLOC_022579 NA non-coding downstream 416659 39527970 ~ 39534894 (-)
XLOC_022578 NA non-coding downstream 496431 39415030 ~ 39455122 (-)
XLOC_022577 NA non-coding downstream 939191 39011955 ~ 39012362 (-)
XLOC_022594 NA non-coding upstream 507546 40459952 ~ 40506113 (-)
XLOC_022596 CR381701.1 non-coding upstream 640411 40592817 ~ 40592934 (-)
XLOC_022607 NA non-coding upstream 1044045 40996451 ~ 40999225 (-)
XLOC_022608 CABZ01056821.1 non-coding upstream 1334927 41287333 ~ 41287449 (-)

Expression


Co-expression Network