XLOC_022591 (tgm1l3)


Basic Information

Item Value
gene id XLOC_022591
gene name tgm1l3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40234602 ~ 40250886 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044520
gtgagagtgtatggatgtttcccagtgctgggttgcagctgaaagggcatccgctgcattaaacaaatgctggaatagttggtggtttattccactgtggtgacccctgataaataagggactaagccgaaggaaaacgaatgaatgaatgatgggcTATTTAATAATTACTATTGTTATACCTtctttttgcatttatttctcAGGCAATGTTCCATCAATACCCAACGGCACACTGGTGATTGTTCCACTTGTGGAAGAATTCAAGAAAAATCGCTGGGAGGCCAAGATTGTTGAAAAGTGCCAAAACCGAATCAAACTCAGCGTGTACTCGCTTCCCACCGCGTGCATCGGACGCTACAGCCTGACCATTGTGACCTGCGGCCCGAAGGGAAGAGCCACCTCATCATGCAACCCCAGCAATGATATTTACATGCTGTTTAACCCCTGGTGCAAAGATGATGCTGTGTATCTGGATGAAGATGCCCAGAGGACTGAGTATGTGCTGAATGACACAGGCAAAATCTTCTATGGAACTAAACATCAGATCGCTTCCAGAACATGGCACTTTGGTCAATTTGACGAAGGAGTCCTGGCTGCGTGTTTGTTTGTGCTGGAGAAGTGTGGTGGAGCATGCAGTGGATGGGGAGACCCTGTTAACGTGGCCAGAGTTGTGTCTGCCATGGTTAATGCCAATGATGACTCTGGTGTGTTGATGGGCAACTGGTCGAACTGCTATGCGGACGGGACTGCTCCAACAGCCTGGTGTGGCAGCAGTGCCATCTTGAAGCAATACCACAAATGTGGAGGAGTACCTGTCAAATATGGACAGAGCTTGGCCTTTGCTGGAGTCACCAACACACTGTTGAGGTGTTTTGGTATTCCTGCTCGGCCGGTCACCAACTTCTGCTCTGCTCACGACACTGATGTGTCCATGACTGTAGACATTTATCTTGACGAGAACTATGACCTGATCGACAGCCTGAACCGGGACTCAATCTGGACCTTCCATGTGTGGAATGAGGCCTGGATGGCTCGTTCAGATCTGCCTGCAGGTTTTGGAGGTTGGCAGGCCATTGATGCGACTCCTCAGGAAACCAGTCAGGGTGTTTTCCGCTGTGGTCCGACCTCTGTTGCTGCCATCCGCAGCGGGCAGGTCTTCCTCAAATATGATGCACCTTTCATTTTTGCTGAGGTGAACAGTGATGTAGTTTTCTGGCAGAGGAAAGCATGTGGGACGTTCGCTGTGGTCCACGTTGACAAGAATGCAGTCGGTCACTGCATCAGCACCAAGGCTGTGGGCTCAGACAAACGTGTGGACATTACCAACCACTACAAGCACCCAGAAGGTTCAGAGGAGGAGCGTCGTGCTGTGGAAACTGCTCTTCGTCATGGCTCCAAAAAGTGCGCATATCCTCTGCCCTGCGCCGAGGATGTCATCTGTGACATCACTATGAAGGGTGATGGAGTGTGTGTGGGCAAGGATGCAGTGCTTTGCATCGCTCTGAAGAATAAATGCAGCTCAACTCGTAGCGTCACCCTCCACAGCCAGCTGTCGGCTGCTTACTACACCGGCATCCACAAGTCCTTGGTGAAGAAGGACCAGACATGCTTCGAGCTCAAGGCTACTGAAACCAAGGTTCTGGAGTGGTCTCTGAAATATGAGGATTACAAGAACCACCTTGTGGATCATTCAACGATGATGGTCACTGTTGCCGGACGCGTCACTCAGACTCAGCAGATTGTGGCCAAACGGTTCAACTTTCGACTGCCCACACCCGGCCTTGCTATTTCTCCTGGATGCGATTGTGTTGTGGGCAAAGAAGTGCCAGTCAAAATCACTTTCCAAAACCCACTGCCCTGCGTGCTGAAAAACGCCATCTTCCGCATTGAGGGACTGGGTCTGAAGCACTGCAGATCCATCAACTATGGTGATATTGCAGGCCTGGCCACTGTGAACCTGACCGAGAAGTTCATTCCCAAATGTCACGGCCCTCACAAGCTTCTGGCATCTCTGGATTGTCCTCAGCTCACTCAGGTGCATGGATTCACCGACGTCGTTGTCAAAGAAAAGTGAACAAGCGGCTGAATTGATAATTCAGCAAGCTTTTCATGCTGATCGACTGGCAGAGTTAAAAGCTTTTAGTTAAATGTAATCAATAGCAAACGCTGAAGCAAAGGGTGCATTTTCATTAGGGAGCTTGCTTTTAGATGTTGCTGTTTGTGGAAGTATTGTTGTAGAATATGTGATATTTGTAGtttcacatatttttaaaaagatctgACATATATAAAACTATTAACCACATCAACTACTTCCTTTCATGCAGTCAACCTAaccaaatttcattcattttagttGCATGAATTATCTGTCCACCAAATTGCCTCAATAAACGACATTCGCTTGCAATACTTGTGCATTTGTAATGTGTCTTTTTGAGTTTGTTGATGAAATG

Function

symbol description
tgm1l3 Predicted to enable metal ion binding activity and protein-glutamine gamma-glutamyltransferase activity. Predicted to act upstream of or within peptide cross-linking. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120718-1 Predicted to enable metal ion binding activity and protein-glutamine gamma-glutamyltransferase activity. Predicted to act upstream of or within peptide cross-linking. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

Ensembl:

ensembl_id ENSDARG00000005913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044520 True 2459 mRNA 0.48 11 40234602 40250886

Neighbor

gene id symbol gene type direction distance location
XLOC_022590 tgm1l2 coding downstream 39870 40185381 ~ 40194732 (-)
XLOC_022589 xcr1a.1 coding downstream 274818 39958166 ~ 39959784 (-)
XLOC_022588 CU657980.1 coding downstream 282196 39951553 ~ 39952406 (-)
XLOC_022587 CU657980.2 coding downstream 289024 39944652 ~ 39945578 (-)
XLOC_022586 NA coding downstream 292486 39940240 ~ 39942116 (-)
XLOC_022592 CABZ01067002.1 coding upstream 6347 40257233 ~ 40296806 (-)
XLOC_022593 NA coding upstream 127767 40378653 ~ 40407945 (-)
XLOC_022594 NA coding upstream 209066 40459952 ~ 40506113 (-)
XLOC_022595 rnf146 coding upstream 275099 40525985 ~ 40536089 (-)
XLOC_022596 CR381701.1 coding upstream 341931 40592817 ~ 40592934 (-)
XLOC_022579 NA non-coding downstream 699708 39527970 ~ 39534894 (-)
XLOC_022578 NA non-coding downstream 779480 39415030 ~ 39455122 (-)
XLOC_022607 NA non-coding upstream 745565 40996451 ~ 40999225 (-)
XLOC_022608 CABZ01056821.1 non-coding upstream 1036447 41287333 ~ 41287449 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_00205299_00213625 TGM1L3 coding CI01000001 null 205299 ~ 213958 (+)