Fish Transcriptome and Expression Database

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model fish

XLOC_022596 (CR381701.1)

Basic Information

Item	Value
gene id	XLOC_022596
gene name	CR381701.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	40592817 ~ 40592934 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044527
ggctagtaatattgacctcaaaatcgATCACCaaggtcacccactgaagctaagcagggctgcgcccggtcagtaccaggatgggagaccacatgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085799

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00044527	True	118	rRNA	0.54	1	40592817	40592934

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022595	rnf146	coding	downstream	56728	40525985 ~ 40536089 (-)
XLOC_022594	NA	coding	downstream	86704	40459952 ~ 40506113 (-)
XLOC_022593	NA	coding	downstream	184872	40378653 ~ 40407945 (-)
XLOC_022592	CABZ01067002.1	coding	downstream	296011	40257233 ~ 40296806 (-)
XLOC_022591	tgm1l3	coding	downstream	341931	40234602 ~ 40250886 (-)
XLOC_022597	si:dkeyp-27c8.2	coding	upstream	162830	40755764 ~ 40766518 (-)
XLOC_022598	si:dkeyp-27c8.1	coding	upstream	179339	40772273 ~ 40790196 (-)
XLOC_022599	si:dkeyp-27c8.1	coding	upstream	182417	40775351 ~ 40776046 (-)
XLOC_022600	si:dkeyp-27c8.1	coding	upstream	183303	40776237 ~ 40779334 (-)
XLOC_022601	si:dkey-194e6.2	coding	upstream	198499	40791433 ~ 40792128 (-)
XLOC_022588	CU657980.1	non-coding	downstream	640411	39951553 ~ 39952406 (-)
XLOC_022587	CU657980.2	non-coding	downstream	647239	39944652 ~ 39945578 (-)
XLOC_022586	NA	non-coding	downstream	650701	39940240 ~ 39942116 (-)
XLOC_022607	NA	non-coding	upstream	403517	40996451 ~ 40999225 (-)
XLOC_022608	CABZ01056821.1	non-coding	upstream	694399	41287333 ~ 41287449 (-)
XLOC_022609	NA	non-coding	upstream	710578	41303512 ~ 41305045 (-)
XLOC_022611	CABZ01056817.1	non-coding	upstream	752810	41345744 ~ 41345858 (-)
XLOC_022612	NA	non-coding	upstream	1019835	41612769 ~ 41618019 (-)

Expression

Co-expression Network