XLOC_022603 (si:dkeyp-27c8.1)


Basic Information

Item Value
gene id XLOC_022603
gene name si:dkeyp-27c8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40810286 ~ 40812119 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044536
CAGCAAAGCTTAAGACCAAACATGATGCACCACAGCGGTTGAGTGTCCCAGATGCAAGCACTCCTGATGTGACTGACCCAACAGGGCCTTTGAACACCAGTGTGACCGATGAGGATGCCGTGGATTATTCTCCTGAAACCCCTGAAGATCACCGGCCAACAGGAATCAAAGAGTGGATGATGAATAAACTTTCGGAATTCCACTGCAAGGATACAAGTCCTAGACACGATCTTGCAAAGCCGGGTCCGAGCAGTTTGCCTTCTCAAAAACAGCTGGAAGAAATTTTCGACTTTGAGAAGCTTGCAGAGTTATTACAAGTAGAAGACACCGTGAACAAATGTAAACTGCCCCTGTCACCATTTACGGAGGTCTGGCGCAATGTCTACATTGGAGATGAAGAGACAGCAAGAAATCGACGCAAACTGATGGAATTGGGAGTCACCCATATCCTAAATGCAGCAGCGCCGAAGATGGCCTGGTTGGGAAAACTAAGTAAGAGTGGAGTAAACGGAAAGATCCTTACAGGACCGGAATATTATGAAGGCATGGACATCAAATATTGCGGCTTGCCTACAACATACGACCAGTCCAGAATCATCAGATACTTCTGGCCAGCTGGCAAGTTCATCAAAAAGGCCCTGAGAAACCCAGACAATGTCCTGTTCATTCACTGCAGGCATGGTGTCAGTCACGCGCCAACATTGTTTGTAGCATATCTGATGATGTACTACCAAATACCTCTGGAGGAAGCCTTGAGTTATGTCACCAGGGCGAGGCGCATCAGGCTCTTCACATCCTTTCTGCTCCAGTTGTCGTTACTTGAAcccaagaaaaagaaagaaatccaACAGCAAAAAGGCATAGTAATATACAACTGAATAAACAACACTGCAcagaaaggtcgctggtttgagtcccacaCAGAAAGGCCTTCTGGtctagccaggactcaaaccatcGACCCTAGCCcaaagctatttttatttttcagctttcttttttAATCTCTGGATATatgtgcactttaaaa

Function

symbol description
si:dkeyp-27c8.1 Predicted to enable protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044536 True 1030 mRNA 0.46 4 40810286 40812119

Neighbor

gene id symbol gene type direction distance location
XLOC_022602 si:dkey-194e6.2 coding downstream 13294 40792319 ~ 40796992 (-)
XLOC_022601 si:dkey-194e6.2 coding downstream 18158 40791433 ~ 40792128 (-)
XLOC_022598 si:dkeyp-27c8.1 coding downstream 20090 40772273 ~ 40790196 (-)
XLOC_022600 si:dkeyp-27c8.1 coding downstream 30952 40776237 ~ 40779334 (-)
XLOC_022599 si:dkeyp-27c8.1 coding downstream 34240 40775351 ~ 40776046 (-)
XLOC_022604 si:dkeyp-27c8.1 coding upstream 1231 40813350 ~ 40814080 (-)
XLOC_022605 si:dkeyp-27c8.1 coding upstream 3255 40815374 ~ 40817792 (-)
XLOC_022606 si:dkey-194e6.1 coding upstream 60569 40872688 ~ 40895168 (-)
XLOC_022607 NA coding upstream 184332 40996451 ~ 40999225 (-)
XLOC_022608 CABZ01056821.1 coding upstream 475214 41287333 ~ 41287449 (-)
XLOC_022596 CR381701.1 non-coding downstream 217352 40592817 ~ 40592934 (-)
XLOC_022594 NA non-coding downstream 304173 40459952 ~ 40506113 (-)
XLOC_022593 NA non-coding downstream 402341 40378653 ~ 40407945 (-)
XLOC_022588 CU657980.1 non-coding downstream 857880 39951553 ~ 39952406 (-)
XLOC_022587 CU657980.2 non-coding downstream 864708 39944652 ~ 39945578 (-)
XLOC_022609 NA non-coding upstream 491393 41303512 ~ 41305045 (-)
XLOC_022611 CABZ01056817.1 non-coding upstream 533625 41345744 ~ 41345858 (-)
XLOC_022612 NA non-coding upstream 800650 41612769 ~ 41618019 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G104666 LOC100194703 non-coding NC_048566.1 CM023220.2 967407 ~ 967722 (-)
tiger barb (Puntius tetrazona) G79565 NA unknown NC_056709.1 CM032078.1 6096133 ~ 6096480 (-)