XLOC_022610 (scube3)


Basic Information

Item Value
gene id XLOC_022610
gene name scube3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41313084 ~ 41585776 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044541
TGAGTGCTCAAGTCGACCGTGTTTCTCCTCCTGTTCTCCGCGCACTCAGTCTCCGCAAAACCAACAAATAAAGCACTCTCTCTCGCTCGCGAACACCCGGGAATACCGCACATCCACGTCTGGACTCAAGACTCTCTCAGTTTGCCCTCTTTTAAAAACCTCCTCGCCAGTCTCACTGAAGATTcaaggtgttttttgtgttttgcgATGATGTTCATGCATGTTCTGATGCGCGCTGGTTTTGGATTATTCAGCGTCGCTCTGGTCGCCTTTGTCCAGGGTCCAGCCGGTGTTTTTGCCAGCAGAAACCCGCAAGATGTGGACGAGTGCGCCGAGGCCCTGGACAGCTGCAGTATAGATGCCATCTGTCAGAACACCCTCAAGTCATACAAATGCATCTGCAAATCAGGATACAAAGGCGACGGGAAACACTGTGAAGACATCGATGAGTGTGCCAGCGAATATAATGGAGGATGTGTTCACGAGTGCATCAACATCCCTGGAAACTACAGATGCACGTGTTATGACGGCTTCCGTCTGGCCCACGACGGACACAACTGCTTGGATGTGGATGAATGTGCTGAAGGAAACGGCGGCTGTCAGCAGATCTGTGTTAACATGATGGGCAGTTATGAATGTCGCTGCAGAGACGGCTTTCTGCTGTCCGACAACCAGCACACCTGCATCCAGAGGCCCAAAGTACGTTTCAATGGGACTAAGGATGTGGCCACCTGCATGGATAAAAATCACGGCTGTGCCCATATTTGCCGTGAGACCCCTAAAGGAACCATCGCCTGTGAATGCAGACCAGGATTTCAGCTCACCAAGAACAATCGAGACTGTAAATTGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAAACGGATCATGGGCCCAAATGCTCGTGTCACATGAAGTTTGCTCTTCACTCAGATGGAAAGACCTGTGTAGAGACGTGTGCAGTGAATAACGGTGGTTGTGACAGCACGTGTCATGATGCTGTGACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTCACTTTACAGCCCGACCGCAAGACCTGCAAAGACATTGATGAATGTCGCATGAACAACGGTGGCTGTGATCACGTTTGCAGAAACACCGTCGGCAGCTTCGAGTGCAGCTGCAAGAAAGGATACAAACTCCTGACCAATGAGAGGACGTGCCAAGATATAGACGAGTGTTCGTTTGACCGGGCCTGTGACCACACATGCATAAATTCACCCGGGAGTTTCCAATGCTACTGTCATAAAGGCTACGTCCTCTACGGCGTGGCTCACTGCGGAGATATCGACGAGTGCAGCATTAATCAGGGTGGCTGTAAATCGGGCTGTCTTAACACGCTGGGCAGTTATGAATGTACCTGTCCTCCTGGATACAAACTGCACTGGAACAAGAAGGACTGTGTGGAGCTCATAAAATGTGCCTCCAATTTGGTGGCCCCCAAAGCCACCCTGGCCTGCAGTAAAACGGGCAAGAAAGAGAGCTGTTCCCTCACGTGTGCATCCAAAGCACATTATCTGTCAGAATCAGACAGCAGTTATTCTGTCAGCTGTGGAATATCAATCCTGCGAGGAAAATCTCAGAGCAGAGTCAACACGAGCAGCATCCAGAGCTGCATAGAGACTCAGGTTCATCCAGTGAAGCAAACGGCGTCTTTTCGGATCAAGAACGCCAAATGTCACCTGCACCCGAAGCATAAGGGGAGAGCAGAGGACAACGGCAGACAGATCGGCCCagGCGGTCAGCCGTGCAACAACTGCCTGGTCACGTTTGTTAACCTGAAGTGTGACTCCTCTAAGAAGACCAAAGGCGGTCGTCGAGCTCGAAACCCGACAAATAAAGAGGTGACGCGCATTACTCTGGAGCTGGAGGCCGAGGTCAAACCGGGAGACGCAACCgGGAACTGCAACATGATGTGTCAACGGCAGCACATGGAGCAGCAGATGAAGACGTACATTAAAACCCTGAAGAAGTCCATTAACCAGGAGCGTTTCCTGCTGCGTGTCGCTGGACTGGAGTATGAGGTGGCACAGAAGCTCACACAGACAGCGTTGAAGCAGGAGAACTGCGGACCGGGCCGAGAAAAGGACAGCGGACGTTGTGTCAGATGTTTGCCTGGCTCATATTACCATGGGGAGCAGGAGCGATGCATCCAGTGCCCACCGGGAACCTTCCAGGAGCGGGAAGGTCAGCTTGCCTGCGATCTGTGTCCTGGAGGAGACCGGCATGGCCCACAAGGAGCCCGCAACATCACGTCATGTGCAGGTCAGTGTCCACCAGGGCATTTCTCCAGCGACGGGTTCAAGCCCTGTCAGCCGTGTCCATTGGGAAAATACCAGCCAGATCCAGGACGGACCCTCTGTTTCTCCTGTGGAGGTGGACTCAGTACTAAAAGAGAGGGCGCCAGTTCATTCAATGACTGCGAGGTCAAAGtgttgtGTTCTCCAGGTCATTATTATAACACATCAGTTCATCGGTGTATCCGCTGTCCTCATGGAACCTACCAGGCTGAATTCAGACAGAACTACTGCATCTCCTGTCCTGGAAACACCACCACAGACTTTGACGGAGCCATCAGTGTGTCTCAGTGCAAGAATCGCGAATGCGGGGGTGAAATCGGCGAGTTCATTGGATACATCGAGTCACCCAACTATCCCGGAAACTACCCAGCCAATGTGGAGTGTGTGTGGACCATCAACCCTCCACACAAACGCAAGATTCTGATTGTGGTTCCTGAGATCTTCCTCCCGTCTGAGGATGAGTGTGGAGATGTGCTGGTCATGAGGAAGAACTGGTCTGCAACCTCTATTACCACCTATGAGACGTGTCAGACATACGAGAGACCGATTGCATTTACAGCCCGATCGAGGCGCCTCTGGATCAACTTCAAATCCAATGATGTGAACAGCGCTCGTGGTTTCCAGATTCCATACGTCACTTATGATGAAGACTATGAGCAGCTGGTTGAAGATATCGTAAGAGACGGACGGCTTTATGCCTCTGAAAACCATCAAGAAATACTCAAGGataaaaaactgattaaaacacTGTTCGACGTTCTGGCTCACCCTCACAATTACTACAAGTACTCGACTCGAGACTCCACGGAGATGCTCCCGCGCTCCTTCATTCGCCTCATCCACAGCAAAGTCTCGGCCTTCCTACGTCCGTACAATTAATCCAAAAAGACCACCATCCACCTCCACACAGGCCTCGAGTCAA

Function

symbol description
scube3 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060717-1 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

Ensembl:

ensembl_id ENSDARG00000011490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044541 True 3259 mRNA 0.52 22 41313084 41585776

Neighbor

gene id symbol gene type direction distance location
XLOC_022609 NA coding downstream 8039 41303512 ~ 41305045 (-)
XLOC_022608 CABZ01056821.1 coding downstream 25635 41287333 ~ 41287449 (-)
XLOC_022607 NA coding downstream 313859 40996451 ~ 40999225 (-)
XLOC_022606 si:dkey-194e6.1 coding downstream 417916 40872688 ~ 40895168 (-)
XLOC_022605 si:dkeyp-27c8.1 coding downstream 495292 40815374 ~ 40817792 (-)
XLOC_022612 NA coding upstream 26993 41612769 ~ 41618019 (-)
XLOC_022613 si:ch73-184c24.1 coding upstream 43727 41629503 ~ 41651759 (-)
XLOC_022614 NA coding upstream 71404 41657180 ~ 41659516 (-)
XLOC_022615 stk35 coding upstream 153945 41739721 ~ 41762956 (-)
XLOC_022616 GMEB2 coding upstream 214630 41800406 ~ 41824460 (-)
XLOC_022596 CR381701.1 non-coding downstream 720150 40592817 ~ 40592934 (-)
XLOC_022594 NA non-coding downstream 806971 40459952 ~ 40506113 (-)
XLOC_022617 NA non-coding upstream 269363 41855139 ~ 41857539 (-)
XLOC_022618 NA non-coding upstream 351228 41937004 ~ 41937979 (-)
XLOC_022621 NA non-coding upstream 746143 42331919 ~ 42334991 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000192_00124135_00167418 SCUBE3 coding CI01000192 null 123577 ~ 167829 (-)