XLOC_022612


Basic Information

Item Value
gene id XLOC_022612
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41612769 ~ 41618019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045122
CTCTGCTGATCGCAATTCTCTTTCCCTTTTACCGAGACTGAGTGAAAGGCAAGCGGCCAATCAGCATTCGCTGAGAGACACGCAGCCAGCCTATCGGCTTCGCCGAGCTACTTGCAGCAAAACAACCCGCCCACTGCGCTCGGCAGATGTGAAAGTGAGCTTAACTGATCGCAAACAAAGCTTTCTGTGCCGTTGCATAAGACAAACTCCTGTTTATGTTATAAGTCGTGTGCGTATATGAAAaaagaccacacacacacacgtatgcttAATCAATAACCTTGGCATACTGAGTTGTGGTGATAATAAACGGGTTACTCCCATACCCAAACCATCTTGTACGTCTCTTACCGGACACCCTGTGGTGGGTTTCCAATTAACTGGCAACATAactaaatgagattgtgctacTGAAGTGCACTCATTTTTACACAGCTGTTCTGAATAAAAAGCTGATCAGTGATGTGGATATGATATAAGAACAGGAAAGTGACTAGAAAACATCTTCAGATCCTCCCTTGGTGTTGATCTTGGTGTTATTCCGCACCTGGTGGTCATTTTCTTAACTATCTGACAAACATCATTTAACTGGAAGCCATTCACTTAAACAGCAGCCTGACGGGATGCATTTTAATATATCAGGACTCTGAGTGGAATTAAATCAATGTCAGTCACTATAGTGCTGTTGTATATTGGTTGACTGCCTGGTGTAATGCAGTAGCATGCAGGTTGATCCTCCCGAGGACTGGTTTGTGCACAATCGTCTCTGTGCCCTTGAGCAAGACACCTCAGGTTATCCAGCAGAACTGTCCTTGTAAAAGTgcagtcactttggataaaagcctgAGCTTGATGAGAAGGTAGAAATTAAATAGCCGCAGGAGGCCCAGATGGCCGGTTTCTAGGGGTCAGAGCTGTTTCCTGCCTCTTTAGTGATAAATGAAGGGAAAGCAACACGTCTGTGgggttttgtttttctggattgctgcTGTTCTTTAATCAAAATGCAGAAGCAGCAGGAGTGGACTAGACTGTTGTAATCTGAAGAGGGCGCCAATGAGCATAGACATTGCTATGCTACTGTGATTTAAAGTGCAAGATCTAAAACTAATcaaatgattttgttagctcacattgctagtatTGTGCTGAACAATGAATCTGTGCATGTCATAAAAAAAccccttgtaatctaaaattaaagTCTGTAAATGAAGCACCTGTTTGTTattaattcagtcattttcttttctgcttattccatttattaatcaggggtcgccacagcggaatgaaccaccaacttatccagcataggttttttacccagtggatgcccttccagcagcaatccatcactgggaaacatagctgtttgttttcagttaaattctcagattaaagAGACTGCACATCTGGATATGAGGATGGAGATTCGGGAGTTTGGTGCCATCAGGAGCTCCTTTGCATTTCTGCGGTTTACCAGCAGCTTCTCTAATGGCCTCCCAGAAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045122 True 1512 lncRNA 0.43 3 41612769 41618019

Neighbor

gene id symbol gene type direction distance location
XLOC_022610 scube3 coding downstream 26993 41313084 ~ 41585776 (-)
XLOC_022611 CABZ01056817.1 coding downstream 266911 41345744 ~ 41345858 (-)
XLOC_022609 NA coding downstream 307724 41303512 ~ 41305045 (-)
XLOC_022608 CABZ01056821.1 coding downstream 325320 41287333 ~ 41287449 (-)
XLOC_022607 NA coding downstream 613544 40996451 ~ 40999225 (-)
XLOC_022613 si:ch73-184c24.1 coding upstream 11484 41629503 ~ 41651759 (-)
XLOC_022614 NA coding upstream 39161 41657180 ~ 41659516 (-)
XLOC_022615 stk35 coding upstream 121702 41739721 ~ 41762956 (-)
XLOC_022616 GMEB2 coding upstream 182387 41800406 ~ 41824460 (-)
XLOC_022617 NA coding upstream 237120 41855139 ~ 41857539 (-)
XLOC_022596 CR381701.1 non-coding downstream 1019835 40592817 ~ 40592934 (-)
XLOC_022618 NA non-coding upstream 318985 41937004 ~ 41937979 (-)
XLOC_022621 NA non-coding upstream 713900 42331919 ~ 42334991 (-)
XLOC_022622 NA non-coding upstream 744026 42362045 ~ 42454539 (-)

Expression


Co-expression Network