XLOC_022615 (stk35)


Basic Information

Item Value
gene id XLOC_022615
gene name stk35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41739721 ~ 41762956 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044544
attgtttatgtcAGTCAGACGATTGATGGAGGAAGTGAcaaaaaacaccaaaacaaactAATCGATTTGACTTTCCGCAACTCTCATTCAGAGACGTTATGAAAAACAGGATTATTGCCCCGAAACATATGCTGTCAACGCAAGGGGTAATAATAAACTCATGGAGCTGCGGAGAGTAACGAGCCTCCGGCGGGGCTGCAAAAGAGCCAAGCCGCCCAGCGCGATCATGTGGCGGGATAGTAAAGTTCTGCGCCCGCTGCCCGTGGAGACCAATAATGATGAGGAACCCATGGAGGAAGACGACTTTTTCTCCTTGGGGTTCCTCAAGAAGGACAATTTCGAGGCTGGGATAGTCTTCACAGCGCCTCGGTATAGTTTAATTCGGGAAGTGGGTCGCGGGAGCTACGGCGTGGTTTACGAGGCCGTCGCCCGGAGGTCTGGAGCTCGTGTGGCGATTAAAAAACTCCGTTGCGACGCGCCTGAAAAAGTGGAGCTGGCGCTGGCTGAGTTCTGGGCCCTGGCGAGCCTGGAGAAAAGGCACGAAAATGTGGTGCAACTGGAGGAGTGTGTCCTGCAGAGAAACGGGATGGCACAGAAGATGAGCCACGGGAACAAACGAAACAAGCAGTATTTGAGATTAGTGGAAACGTCGTTGAAAGGTGAGCGTATCCTGGGTTACCCAGAGGAACCTTGTTATCTTTGGTTTGTTATGGAGTTCTGCGATGGCGGTGACCTTAATCAGTACATCCTCTCACGACGGCCCGATCCACGGACCAACCGAAGCTTCATGAAACAATTAACCAGTGCTGTGGCCTTCCTCCATAAAAACAACATCGTCCACCGGGACCTCAAACCAGACAACATTCTCATCTCGCAGAAATCCGGCAATCCTGTCATCAAGGTTGCAGACTTTGGTCTCAGCAAGGTGTGCGCGGGACTCAGCTGCATGCAAAACGAAGGCGACGATCAGGTTAATAATAAGAACATAGTGAACATTAATAAGTTCTGGTTATCATCAGCATGCGGATCTGACTTTTACATGGCACCCGAGGTGTGGGAAGGCCATTACACGGCCAAAGCGGACATTTTTGCGCTAGGCATCATCATTTGGGCTATGATTGAACGGATCACGTTTATTGATGCCGAGTCTAAGCGAGAGCTTCTCGGGACGTATGTTCGCCAGGGAACTGAGATCGTCCCGGTGGGTGAAGCCTTGCTGGAGAATCCCAAAATGGTTTTACACATCCCGCAGAAAACACGGAGCATCATGTCGGAGGGCGTCAAGAGGCTTCTGCAGGACATGCTTGCGGTTAATCCACAGGACCGGCCAGATGCATTTCAGCTGGAGGTCAGAATGGACCAGGTCACATGTGCGGCGTAAGAGGACCCGATTGGCCAAAACAAGCATGCAACTTTTTCAGGTTTTCACAGTAAGACAGAAGTGAAAAAGGGAAAAAGCCAATCCTGGAACTGTGAATTGACTTTTGCGAACACTTGCAAGAAGCAGAAGTGAAATTAAAGAGATTTCCTGTCTATTTTAAAGACCCATCAGATGGAAATGCTATGCAGGTATCATCATCAACACCCCCAAAACTCATCACAACATCTAATTCCAGATCTCACCAGCAATCCAGTCATATTCCTGCTGTTGTTTTAGACCAGATGTTGCACTTTGTCTGTACCTCTGTCAAAACTACCTACCACTTACCACACAGTATACATGTGAATAGCTAGATGTCGATAATAGGGTCGAGCGAATGTCTGCGAATGCTCTTAAATATGCACCAGACGACAGAGAAGGAAGTTATTCTGAAGCTCACGAGCACGAAGACACACTGTGAACGATATAATGTGAATTTATGCGTGCAAAGTTACACCGTTTCTCCTTTAGGTCACGTTAAATACAGCATttcttcccaaaaaaaaaaaaaaaaa
>TCONS_00044545
CATGGAGCTGCGGAGAGTAACGAGCCTCCGGCGGGGCTGCAAAAGAGCCAAGCCGCCCAGCGCGATCATGTGGCGGGATAGTAAAGTTCTGCGCCCGCTGCCCGTGGAGACCAATAATGATGAGGAACCCATGGAGGAAGACGACTTTTTCTCCTTGGGGTTCCTCAAGAAGGACAATTTCGAGGCTGGGATAGTCTTCACAGCGCCTCGGTATAGTTTAATTCGGGAAGTGGGTCGCGGGAGCTACGGCGTGGTTTACGAGGCCGTCGCCCGGAGGTCTGGAGCTCGTGTGGCGATTAAAAAACTCCGTTGCGACGCGCCTGAAAAAGTGGAGCTGGCGCTGGCTGAGTTCTGGGCCCTGGCGAGCCTGGAGAAAAGGCACGAAAATGTGGTGCAACTGGAGGAGTGTGTCCTGCAGAGAAACGGGATGGCACAGAAGATGAGCCACGGGAACAAACGAAACAAGCAGTATTTGAGATTAGTGGAAACGTCGTTGAAAGGTGAGCGTATCCTGGGTTACCCAGAGGAACCTTGTTATCTTTGGTTTGTTATGGAGTTCTGCGATGGCGGTGACCTTAATCAGTACATCCTCTCACGACGGCCCGATCCACGGACCAACCGAAGCTTCATGAAACAATTAACCAGTGCTGTGGCCTTCCTCCATAAAAACAACATCGTCCACCGGGACCTCAAACCAGACAACATTCTCATCTCGCAGAAATCCGGCAATCCTGTCATCAAGGTTGCAGACTTTGGTCTCAGCAAGGTGTGCGCGGGACTCAGCTGCATGCAAAACGAAGGCGACGATCAGGTTAATAATAAGAACATAGTGAACATTAATAAGTTCTGGTTATCATCAGCATGCGGATCTGACTTTTACATGGCACCCGAGGTGTGGGAAGGCCATTACACGGCCAAAGCGGACATTTTTGCGCTAGGCATCATCATTTGGGCTATGATTGAACGGATCACGTTTATTGATGCCGAGTCTAAGCGAGAGCTTCTCGGGACGTATGTTCGCCAGGGAACTGAGATCGTCCCGGTGGGTGAAGCCTTGCTGGAGAATCCCAAAATGGTTTTACACATCCCGCAGAAAACACGGAGCATCATGTCGGAGGGCGTCAAGAGGCTTCTGCAGGACATGCTTGCGGTTAATCCACAGGACCGGCCAGATGCATTTCAGCTGGAGGTCAGAATGGACCAGGTCACATGTGCGGCGTAAGAGGACCCGATTGGCCAAAACAAGCATGC
>TCONS_00044546
GGAAGTGAcaaaaaacaccaaaacaaactAATCGATTTGACTTTCCGCAACTCTCATTCAGAGACGTTATGAAAAACAGGATTATTGCCCCGAAACATATGCTGTCAACGCAAGGGGTAATAATAAACTCATGGAGCTGCGGAGAGTAACGAGCCTCCGGCGGGGCTGCAAAAGAGCCAAGCCGCCCAGCGCGATCATGTGGCGGGATAGTAAAGTTCTGCGCCCGCTGCCCGTGGAGACCAATAATGATGAGGAACCCATGGAGGAAGACGACTTTTTCTCCTTGGGGTTCCTCAAGAAGGACAATTTCGAGGCTGGGATAGTCTTCACAGCGCCTCGGTATAGTTTAATTCGGGAAGTGGGTCGCGGGAGCTACGGCGTGGTTTACGAGGCCGTCGCCCGGAGTTCTGGGCCCTGGCGAGCCTGGAGAAAAGGCACGAAAATGTGGTGCAACTGGAGGAGTGTGTCCTGCAGAGAAACGGGATGGCACAGAAGATGAGCCACGGGAACAAACGAAACAAGCAGTATTTGAGATTAGTGGAAACGTCGTTGAAAGGTGAGCGTATCCTGGGTTACCCAGAGGAACCTTGTTATCTTTGGTTTGTTATGGAGTTCTGCGATGGCGGTGACCTTAATCAGTACATCCTCTCACGACGGCCCGATCCACGGACCAACCGAAGCTTCATGAAACAATTAACCAGTGCTGTGGCCTTCCTCCATAAAAACAACATCG

Function

symbol description
stk35 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in solid lens vesicle. Orthologous to human STK35 (serine/threonine kinase 35).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-061103-553 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in solid lens vesicle. Orthologous to human STK35 (serine/threonine kinase 35).

Ensembl:

ensembl_id ENSDARG00000086856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044544 False 1935 mRNA 0.48 3 41739721 41762956
TCONS_00044545 False 1251 mRNA 0.53 2 41753916 41762797
TCONS_00044546 True 733 nonsense_mediated_decay 0.51 3 41754490 41762926

Neighbor

gene id symbol gene type direction distance location
XLOC_022614 NA coding downstream 80205 41657180 ~ 41659516 (-)
XLOC_022613 si:ch73-184c24.1 coding downstream 87962 41629503 ~ 41651759 (-)
XLOC_022612 NA coding downstream 121702 41612769 ~ 41618019 (-)
XLOC_022610 scube3 coding downstream 153945 41313084 ~ 41585776 (-)
XLOC_022611 CABZ01056817.1 coding downstream 393863 41345744 ~ 41345858 (-)
XLOC_022616 GMEB2 coding upstream 37450 41800406 ~ 41824460 (-)
XLOC_022617 NA coding upstream 92183 41855139 ~ 41857539 (-)
XLOC_022618 NA coding upstream 174048 41937004 ~ 41937979 (-)
XLOC_022619 slc1a7b coding upstream 186619 41949575 ~ 42093537 (-)
XLOC_022620 gpx7 coding upstream 456657 42219613 ~ 42232124 (-)
XLOC_022609 NA non-coding downstream 434676 41303512 ~ 41305045 (-)
XLOC_022608 CABZ01056821.1 non-coding downstream 452272 41287333 ~ 41287449 (-)
XLOC_022621 NA non-coding upstream 568963 42331919 ~ 42334991 (-)
XLOC_022622 NA non-coding upstream 599089 42362045 ~ 42454539 (-)
XLOC_022623 CU013526.2 non-coding upstream 640608 42403564 ~ 42403680 (-)

Expression


Co-expression Network