XLOC_022626 (si:ch73-217n20.1)


Basic Information

Item Value
gene id XLOC_022626
gene name si:ch73-217n20.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42726161 ~ 42752550 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044555
tactttagtttttactgcgGTAAACTTAGCATAACAAACTTAATTGTAAAAAACTAACGTTgctttgtttatattaatgttacTACAGTTGCTTtaataccatagcaactatacacTTACAACAACAGATCAATTCAAGTACATTACTagtgtatgtttaaaaaaaaaaaacaaatgtactaTAGTATTTTGTCATTTAGAAACTTTTGAGAACTGTCAAATATAGGCAGCTAATAACTATTAGAGCAATTGCTGGCAAAAAGAATTAGCTAATTAGTTAGCCTTAGAAAAACGTAGGTTTCCGTTCTAACCAGACaccattttcattatttatttcaattcgGTCGTTGAATTCGGATATTATTTGCGTAAATGAGTCTTTACTGAAGATTTACTCTGGCTTTGAGGGCAGGGTTTGAGCTCATGACGAGAGCAGGCGTGTTTTTAAACTGCGTGTGTGAGTATGTGAGGGTAAGTTATTTGTTTTACCTCAGACCTGCTTCACTCCTGCAGACTGTCGGCTGTGAATATGGCGACTGTTTGGAGGAATGCGCTCGTACTTGTTTTTGTGCACCTTGTAGTGTCTCAAACACGCTTTCGATGTGGCGAACCACCAAAATACCCTGATAAACAGCTGGACATTAAATATATCTACAGGCCAGTATTCAACCATCAAGATAAAGTGTCTTATAGATGTCATCGGGGTCACGTGCCATCAGAAGGAAACCGCATGTCATTCTGTATGAGAGGACGCTGGACACCCTTGACCCTGAAATGCCAAAAGGTCAAATGCAACGGGTTGGCAGACATCAAGAACGGGCAGTACAGACGAGAAGGACAGTCATACGGAGATAAAGCCATTGTTATCTGTAATCAAGGATATGTTTTAAAAGGAGTAAAGTTCCGCATGTGTCTGGAAAAAGGCTGGAGTGGTACTGATCCCGTCTGTCTGGCACCACAAGTTACTTGTTCAGCACCTGCTGTGGAAAACAGATGGATTAAACCTGGAGAAAGGACACAATACACACCGCAAGACACTATGAGCATCACCTGCAGTGAAGGGTTTGATCTGATTGGCTCCTCAGTGGTCACATGTGGACCAAACGGCCAATGGCGGGACTTGCCGGAGTGTCATCGTAAAGTGCCAAAGATGACCTGTTCAGCACCTGCTGTGGAAAACAGATCTATAAAACCTGGAGAAAGGACACAATATACGCCGCAAGACACTGTGAGCATCACCTGCAGTGAAGGGTTTGATCTGATTGGTTCATCTTTAGTTACATGTGGACCAGACGGCCAATGGCGGGACTTGCCAAAGTGTCACCGTAAAGTAATCCTCTGCTCTGCACCCGCTGTGGCAAACGGAAGAATCAATGCATTCGGCAACCAGCACAAACCCAGAGACACTGTGAGCATCACCTGCAGCGAGGGCTTTGAACTGATTGGCTCACCGCAGGTCACATGTGGACCAGATGGCCAATGGCAAAGCTTGCCAGAGTGTCACCCTAAAAGACGTTCAGCTAACGGTAAATGTGGTCCACCTCCATCATATCTCCATCACAATGTGTTCTTCAGAGAAGGGACGCCCTCATTGGCTGAGTACTCATCCGGTGCTCGTATTCGGTATAAATGTAATCTAGGACTTCGCCGAGCCTCTGGAAGTGACATCATACGCTGTCAGGGTGGAGAGTGGACAAAATTGGCACTCCGATGTCAGCGGAAAAGCTGTGGTTCTGCTGGAGAGATTTCCTTCGGCCGCTTTCAGTACAGCGGAGTGTTATTCGGAGATTCAGCTAGAGCCATCTGTCAGGAAGGGTATGAGCTGATTGGCCCAGAGGAGCGAGTCTGTCGGGATGGAGGATGGGATGGAAGGATCCCTGTGTGTGAACctgTTTATTGTCCTCCTCCACCTGAGGTCAAAGATGCAGAGGTTTCAGACTTCAGGAATGAAGATGTTCCTGTCGGGCACATGGTGTCGTATCGCTGTCAGACTGGAGCTCTGATCGGGACCCAAGATTTATACTGTACCACCAACGGCACCTGGAGCGGCCCTGCTCCTCTCTGCAAGGACATCAGCTGTCCTCGTCCTGACATTCCTCGTGGATCCAGAATGAGGGGCTTCAGGTCAGTCTATAAGTACGGGAACACCGTCACCATCGCTTGCAGTCCTGGATTACGACTCTACGGGGAAAGTTTCGTCACTTGTGGAGCTGACGGAAACTGGACACCCAAACTACCAGAGTGTCGGAGATAA
>TCONS_00044556
aaaaaaaacaaatgtactaTAGTATTTTGTCATTTAGAAACTTTTGAGAACTGTCAAATATAGGCAGCTAATAACTATTAGAGCAATTGCTGGCAAAAAGAATTAGCTAATTAGTTAGCCTTAGAAAAACGTAGGTTTCCGTTCTAACCAGACaccattttcattatttatttcaattcgGTCGTTGAATTCGGATATTATTTGCGTAAATGAGTCTTTACTGAAGATTTACTCTGGCTTTGAGGGCAGGGTTTGAGCTCATGACGAGAGCAGGCGTGTTTTTAAACTGCGTGTGTGAGTATGTGAGGGTAAGTTATTTGTTTTACCTCAGACCTGCTTCACTCCTGCAGACTGTCGGCTGTGAATATGGCGACTGTTTGGAGGAATGCGCTCGTACTTGTTTTTGTGCACCTTGTAGTGTCTCAAACACGCTTTCGATGTGGCGAACCACCAAAATACCCTGATAAACAGCTGGACATTAAATATATCTACAGGCCAGTATTCAACCATCAAGATAAAGTGTCTTATAGATGTCATCGGGGTCACGTGCCATCAGAAGGAAACCGCATGTCATTCTGTATGAGAGGACGCTGGACACCCTTGACCCTGAAATGCCAAAAGGTCAAATGCAACGGGTTGGCAGACATCAAGAACGGGCAGTACAGACGAGAAGGACAGTCATACGGAGATAAAGCCATTGTTATCTGTAATCAAGGATATGTTTTAAAAGGAGTAAAGTTCCGCATGTGTCTGGAAAAAGGCTGGAGTGGTACTGATCCCGTCTGTCTGGCACCACAAGTTACTTGTTCAGCACCTGCTGTGGAAAACAGATGGATTAAACCTGGAGAAAGGACACAATACACACCGCAAGACACTATGAGCATCACCTGCAGTGAAGGGTTTGATCTGATTGGCTCCTCAGTGGTCACATGTGGACCAAACGGCCAATGGCGGGACTTGCCGGAGTGTCATCGTAAAGTGCCAAAGATGACCTGTTCAGCACCTGCTGTGGAAAACAGATCTATAAAACCTGGAGAAAGGACACAATATACGCCGCAAGACACTGTGAGCATCACCTGCAGTGAAGGGTTTGATCTGATTGGTTCATCTTTAGTTACATGTGGACCAGACGGCCAATGGCGGGACTTGCCAAAGTGTCACCGTAAAGTAATCCTCTGCTCTGCACCCGCTGTGGCAAACGGAAGAATCAATGCATTCGGCAACCAGCACAAACCCAGAGACACTGTGAGCATCACCTGCAGCGAGGGCTTTGAACTGATTGGCTCACCGCAGGTCACATGTGGACCAGATGGCCAATGGCAAAGCTTGCCAGAGTGTCACCCTAAAAGACGTTCAGCTAACGTAATCTTCTGCTCTGCACCCGTTGTGGCAAACGGAAGAATCAATGCATTCGGCAACCAGCACAAACCCAAAGACACTGTGAGCATCACCTGCAGCGAGGGCTTTGAACTGATTGGTTCATCGCAGGTCACATGTGGACCAGACGGCCAATGGCAAGGCTTGCCTGAGTGTCGCCctaaaaaacatttagttaatGTAAACCTCTGCTCTGCACCCGCTGTGGCAAATGGAAGAATCAATGAATTTGGCAACACGTTCAAACCCAAAGACACTGTGAGCATCATCTGCAGCGAGGGCTTTGATCTGATTGGCTCACCGCAGGTCACATGTGGACCAGACGGCCAATGGCAAAGCTTGCCCGAGTGTCACCCTAAAACACGTTTAGCTAACGGTAAATGTGGTCCACCTCCATCATATCTCCATCACAATGTGTTCTTCAGAGAAGGGACGCCCTCATTGGCTGAGTACTCATCCGGTGCTCGTATTCGGTATAAATGTAATCTAGGACTTCGCCGAGCCTCTGGAAGTGACATCATACGCTGTCAGGGTGGAGAGTGGACAAAATTGGCACTCCGATGTCAGC

Function

symbol description
si:ch73-217n20.1 Predicted to be involved in epidermis development and lymph vessel morphogenesis. Predicted to be active in extracellular space.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-232 Predicted to be involved in epidermis development and lymph vessel morphogenesis. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000091584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044555 False 2254 mRNA 0.46 12 42726161 42752550
TCONS_00044556 True 1945 mRNA 0.47 10 42736799 42752387

Neighbor

gene id symbol gene type direction distance location
XLOC_022625 NA coding downstream 98719 42622345 ~ 42627442 (-)
XLOC_022624 CT997819.3 coding downstream 211159 42508734 ~ 42515002 (-)
XLOC_022622 NA coding downstream 271622 42362045 ~ 42454539 (-)
XLOC_022623 CU013526.2 coding downstream 322481 42403564 ~ 42403680 (-)
XLOC_022621 NA coding downstream 391170 42331919 ~ 42334991 (-)
XLOC_022627 pfkfb2a coding upstream 13150 42765700 ~ 42810664 (-)
XLOC_022628 NA coding upstream 76083 42828633 ~ 42831162 (-)
XLOC_022629 dlgap4a coding upstream 83575 42836125 ~ 42883522 (-)
XLOC_022630 CABZ01066224.1 coding upstream 132053 42884603 ~ 42906528 (-)
XLOC_022631 BX004770.1 coding upstream 268644 43021194 ~ 43125946 (-)
XLOC_022632 CR545469.1 non-coding upstream 491541 43244091 ~ 43289451 (-)
XLOC_022637 CABZ01117597.1 non-coding upstream 778051 43530601 ~ 43530715 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000193_00575632_00581576 NA coding CI01000193 null 573546 ~ 581576 (-)