XLOC_022628


Basic Information

Item Value
gene id XLOC_022628
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42828633 ~ 42831162 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045133
CTCCTGAACAcagatgattcagttattcatccTGAATGACTCCTGAACAcagatgattcagttattcatccAGGATGACTCCTAAAcacaaatgattcagttattcattatGATGACTCCTGAACACAGAGGATTCAGTTATTCATTATGAATGACTCCTGAACACAGATGATTCAGCTCTTCATCTTGAATGTGTCCTAAACACGGATGATTCAGTTGTTTATCATAAATGACTCCTAAGCACGGATGATTCAGTTATTCTTCCATAATGACTCTTGAGCACATATGATTCAATTATTCTTCCTGAACACAGATGATTCAGTTATTTGTCCTGAATGACTCCTGAACACAGATGATTTAGTTATTCATTATGAATAACTCCTGAACACAGACGATTCAGCTCTTCATCTTGAATGTGTCCTAAACACGGATGATTCAGTTGTTTATCATAAATGACTCCTTAACACAACTGATTCAGTTATTCGTCCTGAACAcagatgattcagttattcattatGGATGACTCCTGAACACAGAGGATTTAGTTATTCATTATGAATGACTCCTAAACACAGATGATCCAGTTATTCATTATGATGAATTCTGAACACAGATGAATCAGTTACTCATCCTGAATGACTCCTGATTGCAGATGATTCTGTTATTCATCCAGGATGACTCCTAAACACAAATGATTTAGTTATTCATTATGAATGACTTTGAACACAGATGATTCTGTTGAGGGAGTCGATTTAAAAATAATCTGTTCATTGACTTCGTAGTGGATTGAAACACTTTGGTTTGAAAGTAGTAGtactttatttaaatagtgtttttCTTTCTGAAATGTACTCTATAATCATTTGCAACTTCAAAAAGTACTAATCAATCTATAAAcaaattatgtgtgtgtgcgaatgattGGACGAATTTCTGGACCAATCACAGCTCGGCTTGTTTTTACCATGATTGACTTGAGCAATAAAGTAGCATCGTCTTGTTTCAGTTGGTTAACGTTTGCTTTCCATCCTCAGTGTATCTCCACCTTCCTCATTTAATGTCGTTTGTTCGTCCATTTCCTGACCCGCTTCTCTTACAGAAACTGATCCTCAGCACAAACCTCTGAACTCTGCATGTCAGCAATATCAGAGTGGTAAACCCTGCCCGTTTCTGCCCATCATTTGCTTCTGACTGAATATCAATGAACTCGAACCCATGGAATCTTAATAGGGCTACACTGGACCGAACACATTATAAATGGACGTTAAACGGACATCTCGCCTGCCTTTTCTATGTTTTGATTTCTTATTCCTTGTATTGTTTCACAGGTGATGCCTCGGATGTTATTGCAGGAGTGTTGTTGAAGTGTGTGTGAAGGTAAAGGACTCGGATGTAATGTATTTCTCATTGTAATGTTGATCGTCTGCTGATCTGGAGGGGTGTATTGTGATTCGGGCTGATTTGGACACTTTCATGCACATCATTTGGTGTTTGTTCGTCATCCAGgtgtttgtttcattgtttgaAGTGAATCACCAGGGTtaaatgaaccattttaggggGAAAATGAGAGTTGCCATCAATAATAGGATACACATTTAACTAGAAAACATACCTTTGCATTGTTTAACTGGCAAATATTTAGCCGTGTAGCCCAAATTACTGCGTGTTGTTCCATTAACATtaacatgaattacaaaatat

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0071277 cellular response to calcium ion biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0060627 regulation of vesicle-mediated transport biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0015837 amine transport biological_process
GO:0051179 localization biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0015844 monoamine transport biological_process
GO:0015850 organic hydroxy compound transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:2001023 regulation of response to drug biological_process
GO:0015872 dopamine transport biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0050432 catecholamine secretion biological_process
GO:0050433 regulation of catecholamine secretion biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0007610 behavior biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0030537 larval behavior biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0007626 locomotory behavior biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0051592 response to calcium ion biological_process
GO:0015696 ammonium transport biological_process
GO:0014046 dopamine secretion biological_process
GO:0051046 regulation of secretion biological_process
GO:1903305 regulation of regulated secretory pathway biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0071241 cellular response to inorganic substance biological_process
GO:0051640 organelle localization biological_process
GO:0051937 catecholamine transport biological_process
GO:0071248 cellular response to metal ion biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051952 regulation of amine transport biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0005391 sodium molecular_function
GO:0072341 modified amino acid binding molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0030276 clathrin binding molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045133 True 1704 lncRNA 0.37 2 42828633 42831162

Neighbor

gene id symbol gene type direction distance location
XLOC_022627 pfkfb2a coding downstream 17969 42765700 ~ 42810664 (-)
XLOC_022626 si:ch73-217n20.1 coding downstream 76083 42726161 ~ 42752550 (-)
XLOC_022625 NA coding downstream 201191 42622345 ~ 42627442 (-)
XLOC_022624 CT997819.3 coding downstream 313631 42508734 ~ 42515002 (-)
XLOC_022622 NA coding downstream 374094 42362045 ~ 42454539 (-)
XLOC_022629 dlgap4a coding upstream 4963 42836125 ~ 42883522 (-)
XLOC_022630 CABZ01066224.1 coding upstream 53441 42884603 ~ 42906528 (-)
XLOC_022631 BX004770.1 coding upstream 190032 43021194 ~ 43125946 (-)
XLOC_022632 CR545469.1 coding upstream 412929 43244091 ~ 43289451 (-)
XLOC_022633 si:rp71-80o10.4 coding upstream 469730 43300892 ~ 43307237 (-)
XLOC_022623 CU013526.2 non-coding downstream 424953 42403564 ~ 42403680 (-)
XLOC_022621 NA non-coding downstream 493642 42331919 ~ 42334991 (-)
XLOC_022637 CABZ01117597.1 non-coding upstream 699439 43530601 ~ 43530715 (-)
XLOC_022640 NA non-coding upstream 834250 43665412 ~ 43668843 (-)

Expression


Co-expression Network