XLOC_022629 (dlgap4a)


Basic Information

Item Value
gene id XLOC_022629
gene name dlgap4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42836125 ~ 42883522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044558
ACAAAACACACTCGTTTCAGTCGGTTTTATGCGACGTAATGGAAGTACGGCATCGACGGTGATCGCCTCACACACAGAGGAAGAGGAAAAGTCTCCACATGTACGGCGGTGTGTAAGAAGAATCCTCCACCTGTTCCTCCACGCAACGCCTCCAAACCCTACATCTCTGTCACTGTCCAGAGCAGCACCGAATCTGCGCAGGACACCTACCTAGACAGTCAGGACCAGCGGAGCGAGGtcaacagccaatcaggacgcagcaACTCCTCCGACAGCCTCGCCAGCTCTCGGACAGGCAGTCTGGTGAAGGGCTCCAAGCGGCCGCCCATCCTGCCGCCAATCCCTGCTCCGCGGGAACCCGTACAGCTGCCCAGCGCCAGGGTGACCACACCCCCTCCTGCAATAGCCCCGCCCACTCCAGCCCCCGATGCAAAACCCCAGCCCCTGAGCCTCACTCTGGTCCCAGACGAACCACAAGCTCCACCCAAGAGGAAGCTCTCATCCATTGGGATTCAGGTGGATTGTGTGCAGCCGATTCTGAAGGAGGAACAAACCCCCACCACCAGGTTCCAGTCCATCGGGGTTCAGGTTGAAGACGGCAGGCCACTCAGCCGCTTCACTAGCATGGCGTCTAGACAGGAGACGACGGAGGCTGAATCTCAGGAGCAGTCCGACggtaaacatttgggaaataaaacGCCCGGTCAATCTTTGGACAAACCCTCCCTGGCGGACATGACCCGCTCTGCTTCGACCTCGCTGCAGGAGAAGTTGGATCCAGCATTGGACCCATCCCGCCTCCCTCCACCAGACCCGTCTCTGCAGTCCGGCAGCGGGAGCGTTAATGGAGCCGTAGAGCAGCCTGGGGGATCGGCCTGCCTCAGGGACGGGCGATGCTTTCAGAAGCTTCTCCAGGCCGAAACCGACCGCATGGAGGCCTGGTGTCAGCAGATGGAGGAGGAGACCAAAGACAAGCAGCTGTCGGAGGAGGtgttagGGAAGATCCGCAGTGCTGTCGGCAGCGCTCAGCTCTTAATGTCGCAGAAGTTTCGGCAGTTCCAGGGTCTTTGTGAGCAGAACCTGGATGTGAGTGCTCAGCCTCGGCCCACGGCTCAGGATCTGGCAGGTTTCTGGGATCTCCTTCAGCTCTCCATCGAGGACATCAGCATGAAGTTTGATGAGCTTCACCTCCTCAGGTCCAACGACTGGAAGACGACTGACAAAAAGGTCCAGCTCACGCTCCTCTGTTAGCTCCTCTTTTCCAGCAAGGCAGATTGAGTGCTGGTTCAGAGCCAGAGCCTAGTTTCAAATCGCTTCTTTGTCGTTCAACACCCAAAGCAGCAGCTCTGAACCAGGAAAAGAGGAGAAGAAGTCTGCTCCATCGCACACACCAAAGAAGACGGTGAAGGTGAAACCCAGCGGCGGGAAGGAAAAAAGCCTGGACTCTGTGGCTGACAAACAGCGTCAAGAAGCCAGAAAACGTCTGATGGCGGCGAAGCGAGCGGTTTCTGAACGCCAGAATTCCGCCACCGAGAGCGCCGAAAGCATCGAAATCTACGTTCCTGAGGCTCAGACGCgactctaataaaaaaaaaaaacacaacattaaaaaCTCCAGGTCATGAAGAAACACTCAGAAACCGAGGTCGGATTGAAAGCTGAAAACTTAATTGCAAAATGAAAAATACGTCAAAATGCAAGCAAATCGATTTTGAACGCTCAAGCGCTGCCACAGAAGAACCTCCCGTTGACGTTCGTTTCTACGATTAACCTTGTTATAACTATAAATGTCCTAAAAAAGTGAATTATCTCATGGAATATATCAAGACTCTTGTCTGTAAATTGTGCTAATAATATCTTAATAAGAGAAGACGTTCTTGAGACCCTTTACACGCGTCACATGATCCGCTATTTTCACTCGTCACATGACCCGCGGACGGCCAACGTACAGCATGCACTCAGGATCCGCACGTGTGCACTTGTCTTTCATCGGCTCAGTCTTCCTGTTTTCTTCCTGCTTTTTGTTCTTCATCCGGAGCTCAAGAGCGCCCCCTGTGGCCATTTCTAGCGACGTTTTCGACGGAAAGCTCAAAATGTGAACGAATTACTATAGGAATTGGTAGaataacacagtttttttattattattagcactcctctagttttgtttgtttcatgtcATTATTCATTCCAGTAAAATTGAACGCAATTTAACGCATTTCAGCTTGTTTTATTTTTCGAACCGGTTTCTTTAGTTAACAGGGATGAAATATGACCACTCGAACGTTGTTTTAAAATGACGAATGTTTAAGGAACGTGATGGCGATGTCCAGATTTTTACTTGGACCCCGACAGCctgtttgttttgtaatattattattattattaatattatgattgttttatctgttgttcattcattcattccatgtGTTTTCCAGCACACGCTTGTGTTCAGATCAAGCCATGAACGTACAGCCGTGTGTTTGTGTGACCAATTAGAGCCCTTCATTTGTgatcagttgttttttttatcgTTATTTTTCTTTGTCAGATATTAAAAACCTCCGTTACCCAGAA
>TCONS_00044559
CCCGCGTCCTGAAAGCGGATTACCGGATCGCTTCTTTTTCCTCGACTCCTCGAGACGTGGACGGTGGATCCGCCGAACGGAAACGATATCACAGCGAAACAACAGAGAACGACAAAACACACTCGTTTCAGTCGGTTTTATGCGACGTAATGGAAGTACGGCATCGACGGTGATCGCCTCACACACAGAGGAAGAGGAAAAGTCTCCACATGTACGGCGGTGTGTAAGAAGAATCCTCCACCTGTTCCTCCACGCAACGCCTCCAAACCCTACATCTCTGTCACTGTCCAGAGCAGCACCGAATCTGCGCAGGACACCTACCTAGACAGTCAGGACCAGCGGAGCGAGGtcaacagccaatcaggacgcagcaACTCCTCCGACAGCCTCGCCAGCTCTCGGACAGGCAGTCTGGTGAAGGGCTCCAAGCGGCCGCCCATCCTGCCGCCAATCCCTGCTCCGCGGGAACCCGTACAGCTGCCCAGCGCCAGGGTGACCACACCCCCTCCTGCAATAGCCCCGCCCACTCCAGCCCCCGATGCAAAACCCCAGCCCCTGAGCCTCACTCTGGTCCCAGACGAACCACAAGCTCCACCCAAGAGGAAGCTCTCATCCATTGGGATTCAGGTGGATTGTGTGCAGCCGATTCTGAAGGAGGAACAAACCCCCACCACCAGGTTCCAGTCCATCGGGGTTCAGGTTGAAGACGGCAGGCCACTCAGCCGCTTCACTAGCATGGCGTCTAGACAGGAGACGACGGAGGCTGAATCTCAGGAGCAGTCCGACggtaaacatttgggaaataaaacGCCCGGTCAATCTTTGGACAAACCCTCCCTGGCGGACATGACCCGCTCTGCTTCGACCTCGCTGCAGGAGAAGTTGGATCCAGCATTGGACCCATCCCGCCTCCCTCCACCAGACCCGTCTCTGCAGTCCGGCAGCGGGAGCGTTAATGGAGCCGTAGAGCAGCCTGGGGGATCGGCCTGCCTCAGGGACGGGCGATGCTTTCAGAAGCTTCTCCAGGCCGAAACCGACCGCATGGAGGCCTGGTGTCAGCAGATGGAGGAGGAGACCAAAGACAAGCAGCTGTCGGAGGAGGtgttagGGAAGATCCGCAGTGCTGTCGGCAGCGCTCAGCTCTTAATGTCGCAGAAGTTTCGGCAGTTCCAGGGTCTTTGTGAGCAGAACCTGGATGTGAGTGCTCAGCCTCGGCCCACGGCTCAGGATCTGGCAGGTTTCTGGGATCTCCTTCAGCTCTCCATCGAGGACATCAGCATGAAGTTTGATGAGCTTCACCTCCTCAGGTCCAACGACTGGAAGACGACTGACAAAAAGGAGGAGAAGAAGTCTGCTCCATCGCACACACCAAAGAAGACGGTGAAGGTGAAACCCAGCGGCGGGAAGGAAAAAAGCCTGGACTCTGTGGCTGACAAACAGCGTCAAGAAGCCAGAAAACGTCTGATGGCGGCGAAGCGAGCGGTTTCTGAACGCCAGAATTCCGCCACCGAGAGCGCCGAAAGCATCGAAATCTACGTTCCTGAGGCTCAGACGCgactctaataaaaaaaaaaaacacaacattaaaaaCTCCAGGTCATGAAGAAACACTCAGAAACCGAGGTCGGATTGAAAGCTGAAAACTTAATTGCAAAATGAAAAATACGTCAAAATGCAAGCAAATCGATTTTGAACGCTCAAGCGCTGCCACAGAAGAACCTCCCGTTGACGTTCGTTTCTACGATTAACCTTGTTATAACTATAAATGTCCTAAAAAAGTGAATTATCTCATGGAATATATCAAGACTCTTGTCTGTAAATTGTGCTAATAATATCTTAATAAGAGAAGACGTTCTTGAGACCCTTTACACGCGTCACATGATCCGCTATTTTCACTCGTCACATGACCCGCGGACGGCCAACGTACAGCATGCACTCAGGATCCGCACGTGTGCACTTGTCTTTCATCGGCTCAGTCTTCCTGTTTTCTTCCTGCTTTTTGTTCTTCATCCGGAGCTCAAGAGCGCCCCCTGTGGCCATTTCTAGCGACGTTTTCGACGGAAAGCTCAAAATGTGAACGAATTACTATAGGAATTGGTAGaataacacagtttttttattattattagcactcctctagttttgtttgtttcatgtcATTATTCATTCCAGTAAAATTGAACGCAATTTAACGCATTTCAGCTTGTTTTATTTTTCGAACCGGTTTCTTTAGTTAACAGGGATGAAATATGACCACTCGAACGTTGTTTTAAAATGACGAATGTTTAAGGAACGTGATGGCGATGTCCAGATTTTTACTTGGACCCCGACAGCctgtttgttttgtaatattattattattattaatattatgattgttttatctgttgttcattcattcattccatgtGTTTTCCAGCACACGCTTGTGTTCAGATCAAGCCATGAACGTACAGCCGTGTGTTTGTGTGACCAATTAGAGCCCTTCATTTGTgatcagttgttttttttatcgTTATTTTTCTTTGTCAGATATTAAAAACCTCCGTTACCCAGAA
>TCONS_00044560
GTGGAGCAGTGCTTCATGGCCAGCGCTGCTTACGGACAGTTGGAGTCTCAGGCGGTGGAGGCTCTGGATCTTCCCACTCCCACCTGCTTCCGGTCCAGGAGCCACAGTTACCTGAGGGCCATCCAGGCCGGCTGCTCGCAGGATGAGGACACTGGATCTGTGGATTCAGACGAGACGCCGCCTATCACCTCCTCCATCAGCAGCTGCAACAGCGTCACCGTCTCCACATGTACGGCGGTGTGTAAGAAGAATCCTCCACCTGTTCCTCCACGCAACGCCTCCAAACCCTACATCTCTGTCACTGTCCAGAGCAGCACCGAATCTGCGCAGGACACCTACCTAGACAGTCAGGACCAGCGGAGCGAGGtcaacagccaatcaggacgcagcaACTCCTCCGACAGCCTCGCCAGCTCTCGGACAGGCAGTCTGGTGAAGGGCTCCAAGCGGCCGCCCATCCTGCCGCCAATCCCTGCTCCGCGGGAACCCGTACAGCTGCCCAGCGCCAGGGTGACCACACCCCCTCCTGCAATAGCCCCGCCCACTCCAGCCCCCGATGCAAAACCCCAGCCCCTGAGCCTCACTCTGGTCCCAGACGAACCACAAGCTCCACCCAAGAGGAAGCTCTCATCCATTGGGATTCAGGTGGATTGTGTGCAGCCGATTCTGAAGGAGGAACAAACCCCCACCACCAGGTTCCAGTCCATCGGGGTTCAGGTTGAAGACGGCAGGCCACTCAGCCGCTTCACTAGCATGGCGTCTAGACAGGAGACGACGGAGGCTGAATCTCAGGAGCAGTCCGACggtaaacatttgggaaataaaacGCCCGGTCAATCTTTGGACAAACCCTCCCTGGCGGACATGACCCGCTCTGCTTCGACCTCGCTGCAGGAGAAGTTGGATCCAGCATTGGACCCATCCCGCCTCCCTCCACCAGACCCGTCTCTGCAGTCCGGCAGCGGGAGCGTTAATGGAGCCGTAGAGCAGCCTGGGGGATCGGCCTGCCTCAGGGACGGGCGATGCTTTCAGAAGCTTCTCCAGGCCGAAACCGACCGCATGGAGGCCTGGTGTCAGCAGATGGAGGAGGAGACCAAAGACAAGCAGCTGTCGGAGGAGGtgttagGGAAGATCCGCAGTGCTGTCGGCAGCGCTCAGCTCTTAATGTCGCAGAAGTTTCGGCAGTTCCAGGGTCTTTGTGAGCAGAACCTGGATGTGAGTGCTCAGCCTCGGCCCACGGCTCAGGATCTGGCAGGTTTCTGGGATCTCCTTCAGCTCTCCATCGAGGACATCAGCATGAAGTTTGATGAGCTTCACCTCCTCAGGTCCAACGACTGGAAGACGACTGACAAAAAGGAGGAGAAGAAGTCTGCTCCATCGCACACACCAAAGAAGACGGTGAAGGTGAAACCCAGCGGCGGGAAGGAAAAAAGCCTGGACTCTGTGGCTGACAAACAGCGTCAAGAAGCCAGAAAACGTCTGATGGCGGCGAAGCGAGCGGTTTCTGAACGCCAGAATTCCGCCACCGAGAGCGCCGAAAGCATCGAAATCTACGTTCCTGAGGCTCAGACGCgactctaataaaaaaaaaaaacacaacattaaaaaCTCCAGGTCATGAAGAAACACTCAGAAACCGAGGTCGGATTGAAAGCTGAAAACTTAATTGCAAAATGAAAAATACGTCAAAATGCAAGCAAATCGATTTTGAACGCTCAAGCGCTGCCACAGAAGAACCTCCCGTTGACGTTCGTTTCTACGATTAACCTTGTTATAACTATAAATGTCCTAAAAAAGTGAATTATCTCATGGAATATATCAAGACTCTTGTCTGTAAATTGTGCTAATAATATCTTAATAAGAGAAGACGTTCTTGAGACCCTTTACACGCGTCACATGATCCGCTATTTTCACTCGTCACATGACCCGCGGACGGCCAACGTACAGCATGCACTCAGGATCCGCACGTGTGCACTTGTCTTTCATCGGCTCAGTCTTCCTGTTTTCTTCCTGCTTTTTGTTCTTCATCCGGAGCTCAAGAGCGCCCCCTGTGGCCATTTCTAGCGACGTTTTCGACGGAAAGCTCAAAATGTGAACGAATTACTATAGGAATTGGTAGaataacacagtttttttattattattagcactcctctagttttgtttgtttcatgtcATTATTCATTCCAGTAAAATTGAACGCAATTTAACGCATTTCAGCTTGTTTTATTTTTCGAACCGGTTTCTTTAGTTAACAGGGATGAAATATGACCACTCGAACGTTGTTTTAAAATGACGAATGTTTAAGGAACGTGATGGCGATGTCCAGATTTTTACTTGGACCCCGACAGCctgtttgttttgtaatattattattattattaatattatgattgttttatctgttgttcattcattcattccatgtGTTTTCCAGCACACGCTTGTGTTCAGATCAAGCCATGAACGTACAGCCGTGTGTTTGTGTGACCAATTAGAGCCCTTCATTTGTgatcagttgttttttttatcgTTATTTTTCTTTGTCAGATATTAAAAACCTCCGTTACCCAGAA

Function

symbol description
dlgap4a Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP4 (DLG associated protein 4).

GO:

id name namespace
GO:0023052 signaling biological_process
GO:0098962 regulation of postsynaptic neurotransmitter receptor activity biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-51 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP4 (DLG associated protein 4).

Ensembl:

ensembl_id ENSDARG00000060849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044558 False 2580 nonsense_mediated_decay 0.50 7 42836125 42876485
TCONS_00044559 False 2558 mRNA 0.50 7 42836125 42876596
TCONS_00044560 True 2576 mRNA 0.51 7 42836125 42883522

Neighbor

gene id symbol gene type direction distance location
XLOC_022628 NA coding downstream 4963 42828633 ~ 42831162 (-)
XLOC_022627 pfkfb2a coding downstream 25461 42765700 ~ 42810664 (-)
XLOC_022626 si:ch73-217n20.1 coding downstream 83575 42726161 ~ 42752550 (-)
XLOC_022625 NA coding downstream 208683 42622345 ~ 42627442 (-)
XLOC_022624 CT997819.3 coding downstream 321123 42508734 ~ 42515002 (-)
XLOC_022630 CABZ01066224.1 coding upstream 1081 42884603 ~ 42906528 (-)
XLOC_022631 BX004770.1 coding upstream 137672 43021194 ~ 43125946 (-)
XLOC_022632 CR545469.1 coding upstream 360569 43244091 ~ 43289451 (-)
XLOC_022633 si:rp71-80o10.4 coding upstream 417370 43300892 ~ 43307237 (-)
XLOC_022634 zgc:174862 coding upstream 437381 43320903 ~ 43393589 (-)
XLOC_022622 NA non-coding downstream 381586 42362045 ~ 42454539 (-)
XLOC_022623 CU013526.2 non-coding downstream 432445 42403564 ~ 42403680 (-)
XLOC_022637 CABZ01117597.1 non-coding upstream 647079 43530601 ~ 43530715 (-)
XLOC_022640 NA non-coding upstream 781890 43665412 ~ 43668843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01072889_00000369_00006265 NA coding CI01072889 null 369 ~ 6265 (-)