XLOC_022630 (CABZ01066224.1)


Basic Information

Item Value
gene id XLOC_022630
gene name CABZ01066224.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42884603 ~ 42906528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044561
aaagggctaatattgaccttaaaatagtttttaaaaaattaaaaactgcttttcttctagctgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaatttcctgaatctgttaaacatcatttgggaaatatttgctaAAAAGGatgaaaaattcacaggagggcgaatacttctgacttcaactgtatatgtctgtgtgtgtgtgtgtgtgtgtgtgcaggtgcccACAGGAGAGTGGAGCGGGACTCTAGGTAAAGCAGGCGCCGCGGGTGAGATCCCCTGCAGACGGATGCGCAGCGGCAGCTACGTCAAAGCCATGGGTGACACTGAGGACAGCGAGGACTCTGACGGGCCTCCTTCACCCAAACCCTCGCCCAAAAGCGCAGCCAGACGCCAGAGTTACCTAAAGGCCACGCAGCACTCGCTCAGCGAACAACAGCCGCCGCTTCCGCCACGCAACTGTATGCCGTCTCTGTGCGAGGTGCCAACCAACCGCAGCCTGGACAACCTGGACTGTCTAATGGGCCCCGGGGATGCAGCTCTGCAGCACTGGGATGTTGATGGGGGATTCAGTCAGCGCTGCGCCACACTGGGAAGAGGATCTATCATGAGCCAGGTGGAGCAGTGCTTCATGGCCAGCGCTGCTTACGGACAGTTGGAGTCTCAGGCGGTGGAGGCTCTGGATCTTCCCACTCCCACCTGCTTCCGGTCCAGGAGCCACAGTTACCTGAGGGCCATCCAGGCCGGCTGCTCGCAGGATGAGGACACTGGATCTGTGGATTCAGACGAGACGCCGCCTATCACCTCCTCCATCAGCAGCTGCAACAGCGTCACCGGTGAGTGCCGAACACACTCGATCCACATGAACACGGGCAGGAAAACATATGGAGCTTATTATGTGCCAAAACAGTCAGTGTTAGTTTGAATTAAAAACAATTGtgatttaataaaactgaatattatatcCCATTATAAATGGttaaatttcttaatttgaacTTGAATATCTGAAATTTAAGCTTACTGAATTTTTTAAAGCAGATTCATAGACTGCtccagtttgtaaaaatacatttatttgtcattttcctttggcttagtcccttatttattaggggtcgccacagcagaatgaaccaccaactattccagcatatgtttcacacagcgaatgtgttttcccagtgacgggtttgtgaccggaagggcatccgctgtgtacatatgctggataagttggcggttcattccactgtggcgatcagtgattaataaagggactcagctgaaaagaaaatgaatgaataaatgaatgtttgatCATTTTTTCTGATATCTCggtatatgtatgtgtgcatacATGTACACAGACACCATGAGCACTGATAACAGGCACAAAGTCCACAACAAGCTGCTATAAACCTCTCTTGATAAGCACGGCTCTCGTGGACTTTTCATGATGTCATTTTATTGCCTCAAAGGTGATGTCAGTGCAACCAAACGCCTGTTTTTCTGTGTCGGTCATAAAGATGTTAAAGGTGTGAAGTCGGATCTTTTCCCTCTGAGAGCTCGGCATGTGGGCAAGTCCAGACAGATGATCTGCAGGCAGAAAAGTGGCTCACTCTCAGATCCTTACAAggagatataaataaaaatttaaatcctgtcatcattttctGACCCTTCAAATCTAAAAGATCTTATGTAAACAGATTTGTTTAAGTACTATGGTCATTCCGGAGATAAATATAATCATGATCAATTAATGTGGTCAATATTatgaaagtttattattattattattattattattcattttccttcggcttagtccctttattcatcaggggtcaccacagcggaataaaccgccaactattccagcacatgttttacacgcagatgcccttccagcccaaagacagtactgggaaacacccttacactcattctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcataggcCAATGTAGTTTcttcaattgacctatagcgcatttgttttgactgtggggaaaaccggagcacccggaggaaacccatgccaacacagggagaacatgataaaaaacacacataagtgaattaatagtaaatataataaaaataaatgaaatattttttattatttattaaatcaattaattaatgaataaacaataaattcTTTGGtaagaataaatgtaaaaaatataaatagacaaaagttc
>TCONS_00044562
TGTACAAACCAAATTTTGTCAGCCCTAGTCTGCAGCATTCTGaagctctgtgtgtttgtgtgtccacAGGGTTGTGTGACTCAGACGGGCAGTCGCTCGGGCACCCTCACCTCGTCCATGTCCATGGGTCTTGGTCTGGGCCTCGGCGCTCCAGCAATGATCAGCAGCGGTACAGCCACAATCTCCTCTGCTACTGCCGCCAAGATGAACCGACTGCCGGCTAATCTGCTGGACCAGCTGGAGCGCCACCTACCGCTGCAGCGCGACGGCTTCAGCACGCTACAGTTCCACCGGCGCAGCCGCGGCTCCAAACCACGCAGCGAGAGCCCCAGCCGCATCCGAAACCTGGTGCAGTCTGTGCAGAAGCTCTTCGCAAAGTCACAATCCCTAGAGGTGTCCGCAATTAAAGCCGGCAGCATAACAAGCGGAGATAAAACCGGCAGACGAAGCAAAAGCAAAGATCGTGCAAAAACCGAAGGCACCAAACGTCGCCCGAGACCCAATCTCTCCGGTTTCTGGAGCTCAGATGATGGTTTAGAGGATGATCCGCCAGCTCAACCCACCGCTGGGCCGCTAGCGGTGGCATATCGTAACCCGCTTAGCATGATGACACTAGGCAGAGCTGTATCTGACAGCCAGGCGGCGCTCAAACCGCATCCGCAGGGCTACAACACCATCGCCGCGCTCAAATCCTCCAAGAGCAGCGGAGAGCTGAAAGCACAGGCCAGTCTGCCACCAGCTGGAGCCCAGCACGCAGAGCTGGTGAAGAGAGGCTCCTGGTCCACGCTGACCCTCAGTCAGGCCAGACAGGTGCTGCAGAAGAGCTCCGCCACCGTCAACCGCACGCTGCTCAAGTCCAAGTCCTGCCACGGACAGGAGATGACCTGCAACTTCCTACAGgtgcccACAGGAGAGTGGAGCGGGACTCTAGGTAAAGCAGGCGCCGCGGGTGAGATCCCCTGCAGACGGATGCGCAGCGGCAGCTACGTCAAAGCCATGGGTGACACTGAGGACAGCGAGGACTCTGACGGGCCTCCTTCACCCAAACCCTCGCCCAAAAGCGCAGCCAGACGCCAGAGTTACCTAAAGGCCACGCAGCACTCGCTCAGCGAACAACAGCCGCCGCTTCCGCCACGCAACTGTATGCCGTCTCTGTGCGAGGTGCCAACCAACCGCAGCCTGGACAACCTGGACTGTCTAATGGGCCCCGGGGATGCAGCTCTGCAGCACTGGGATGTTGATGGGGGATTCAGTCAGCGCTGCGCCACACTGGGAAGAGGATCTATCATGAGCCAGGTCACAAACATTCACTCATTTACTGCAGATTATTAAAGCATCACTGTTTTTGTTAAACATGTTTTCAATATTTGGTTTAATACAAT
>TCONS_00044563
TGACTCACTGTGGTCTAATATATCCGTGTTTATGCGTGTGTTTTCTCTGTCCTCCAGGTGTCGTCCTCCAGGGCCGTTCACTCTCTTCCTCAGGCGGCGGCATGTTTTAGGACGGACCCTTCGCCGCGACCATGAAAAGCTTAGGGGCGAACCGTAGCCGCCATCTGTCCGACACCTGCGACCCCACAGCGGGCCCCCAGGAGCCGCTGTGCCCCCTGGCTCCGGACCCCCACGCCACCTTCCTCCTGAGCCCAAGCGTCAACCATTATGGCACTCTGGACCCTCATCTCCATCACTTCCCAGTGTCTCCTCCGACGGCGGCGCTTCAGTCCGACTGCCTGCTGCCGCTCAACAACCAGATGAGCAACAGCAGCACCTTCCCTCGCCTGCACTACAGCGGCCCGCAGGAGCACAGCGAATACACACAGGGTTGTGTGACTCAGACGGGCAGTCGCTCGGGCACCCTCACCTCGTCCATGTCCATGGGTCTTGGTCTGGGCCTCGGCGCTCCAGCAATGATCAGCAGCGGTACAGCCACAATCTCCTCTGCTACTGCCGCCAAGATGAACCGACTGCCGGCTAATCTGCTGGACCAGCTGGAGCGCCACCTACCGCTGCAGCGCGACGGCTTCAGCACGCTACAGTTCCACCGGCGCAGCCGCGGCTCCAAACCACGCAGCGAGAGCCCCAGCCGCATCCGAAACCTGGTGCAGTCTGTGCAGAAGCTCTTCGCAAAGTCACAATCCCTAGAGGTGTCCGCAATTAAAGCCGGCAGCATAACAAGCGGAGATAAAACCGGCAGACGAAGCAAAAGCAAAGATCGTGCAAAAACCGAAGGCACCAAACGTCGCCCGAGACCCAATCTCTCCGGTTTCTGGAGCTCAGATGATGGTTTAGAGGATGATCCGCCAGCTCAACCCACCGCTGGGCCGCTAGCGGTGGCATATCGTAACCCGCTTAGCATGATGACACTAGGCAGAGCTGTATCTGACAGCCAGGCGGCGCTCAAACCGCATCCGCAGGGCTACAACACCATCGCCGCGCTCAAATCCTCCAAGAGCAGCGGAGAGCTGAAAGCACAGGCCAGTCTGCCACCAGCTGGAGCCCAGCACGCAGAGCTGGTGAAGAGAGGCTCCTGGTCCACGCTGACCCTCAGTCAGGCCAGACAGGTGCTGCAGAAGAGCTCCGCCACCGTCAACCGCACGCTGCTCAAGTCCAAGTCCTGCCACGGACAGGAGATGACCTGCAACTTCCTACAGGTCAGAGACACACATGAGGTGTCATTATGACACACTTGGATATTGCTTGATTATAATAGCaggctgtcccgggagagacccctgagcttggagatgattgagcccagggctcctgcctggtcaatgagcatgtgagGGAGTACAACATCAGGCAGTTCCCCTGGTAAAAGAAGAAAGGAGGAGAtagggtggatggggggattcttcaaaaaatgcTAGTAATGCTAGTCgagttatttatagtgagtttggaacgatccgattggcttactaatgattacagatgagagaccagctgcgattTGTGCTTCActatttcccaaccctgttcctgaaggcacaccaacagtacatattttggatgtctcccttatctgactcATTATTtttaggttttggagtctcttctaacgttctgatgagttgattcaagTGTGATTGATTTGGAAGAGGTTGAAAAGGTGAACTGTTGATGTGcttttaggaacagggttgggttataaacacacacacacacacacacacacacacatatatatatatata

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0099643 signal release from synapse biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0051592 response to calcium ion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0071241 cellular response to inorganic substance biological_process
GO:0010035 response to inorganic substance biological_process
GO:0071248 cellular response to metal ion biological_process
GO:0010038 response to metal ion biological_process
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0016020 membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0099095 ligand-gated anion channel activity molecular_function
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022835 transmitter-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117217

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044561 False 2303 lncRNA 0.43 3 42884603 42897815
TCONS_00044562 False 1382 lncRNA 0.58 3 42894135 42902381
TCONS_00044563 True 1805 lncRNA 0.55 2 42900936 42906528

Neighbor

gene id symbol gene type direction distance location
XLOC_022629 dlgap4a coding downstream 1081 42836125 ~ 42883522 (-)
XLOC_022628 NA coding downstream 53441 42828633 ~ 42831162 (-)
XLOC_022627 pfkfb2a coding downstream 73939 42765700 ~ 42810664 (-)
XLOC_022626 si:ch73-217n20.1 coding downstream 132053 42726161 ~ 42752550 (-)
XLOC_022625 NA coding downstream 257161 42622345 ~ 42627442 (-)
XLOC_022631 BX004770.1 coding upstream 114666 43021194 ~ 43125946 (-)
XLOC_022632 CR545469.1 coding upstream 337563 43244091 ~ 43289451 (-)
XLOC_022633 si:rp71-80o10.4 coding upstream 394364 43300892 ~ 43307237 (-)
XLOC_022634 zgc:174862 coding upstream 414375 43320903 ~ 43393589 (-)
XLOC_022635 rprd1b coding upstream 498677 43405205 ~ 43454523 (-)
XLOC_022624 CT997819.3 non-coding downstream 369601 42508734 ~ 42515002 (-)
XLOC_022622 NA non-coding downstream 430064 42362045 ~ 42454539 (-)
XLOC_022637 CABZ01117597.1 non-coding upstream 624073 43530601 ~ 43530715 (-)
XLOC_022640 NA non-coding upstream 758884 43665412 ~ 43668843 (-)
XLOC_022642 NA non-coding upstream 977341 43883869 ~ 43884804 (-)
XLOC_022623 CU013526.2 non-coding downstream 480923 42403564 ~ 42403680 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000193_00257738_00262076 NA coding CI01000193 null 256429 ~ 262504 (+)