XLOC_022633 (si:rp71-80o10.4)


Basic Information

Item Value
gene id XLOC_022633
gene name si:rp71-80o10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43300892 ~ 43307237 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044566
GCGTGAGTGGTAAAGAAGACGAGTCTGACACATCTTCAAGTAAAACTCCTATTAAATAATACTGACTTTTTTTCCACCTGAGATACCGCAGATGATACTCTTGGTTATAGCTACGTGCTGTATTGGCATTGCTGGTGCTGCTGCTTTTGCAACACCTGCTTTTGAAGACAATAAAGATGAAGAGATTGAGTCGCTAAAAGTGTGTGAAGAACAAAACATCAGCTTCTCCGTTCAGATCGAGACCTCAGAGGAAGATCCGCAGGTATTTGTGACTCTCCTCTGTAACTCTTCATCACTGGAGATGGTAGCTCAGTTAAACTGCATTAAAGGAGAGTGTTCACGCCAATGCTGGAGATCTGAAGATTCACTCATGTTTGACGGACAAAATATGACGCTGATCCTGATAAACGTCACATACAGCCGAGCTGGAGTTTATAAAGTCAGTAAACTCAGCAGCACACAGGAGGAAAACAAGATGTACAATCTCACCGTGTTCAGCAAGTCTCACACAGAGCCTCCTCTCAGCAGTTTGAGCCCACCACGATCGTCTTCACCCCTGTACAACATATTAATCACTGCAGGATGCACAGTGGTGGGCATCCTGCTGGTCTTCATCATTGTTGCTATCATCAGTGTCTCTTGTAGGAAAGCAAAGCACAAAAGGTGACTTTTAACCCAGTGTCCCAGGATGACGATAGTGCAGCCAGCAGTAGTACTGTTGTATGAACGTGGAGAAATGATTTTAGATGCCCGTATCAACTATTgctgggggaaaaaaagaggaTCATCTGATAGAATATTTTCCTGACATTCTCAAGCCATTCTCTACCTATTTAAATAGCACATATACTCTTTAAAAtgactattttattgaattttttttttggcaatgaTGCCATAGAGAAAACTGATTGGTTCGCTGAAGAAACTGTCAGttaaaccaacataggctcattctgaaaacgtagtcagGCAGTTGAAACCGTCCTCcttgtggatttatgtgagaacagcaggcacgaatggcacagAAATTcgagatctaaaaaagcatacacatcgaCTACTGGTGGATTccagaaaacaataaaaactgcaaaaaaataaaaataaaaacaaa

Function

symbol description
si:rp71-80o10.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-413 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000094316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044566 True 1120 mRNA 0.41 4 43300892 43307237

Neighbor

gene id symbol gene type direction distance location
XLOC_022632 CR545469.1 coding downstream 11441 43244091 ~ 43289451 (-)
XLOC_022631 BX004770.1 coding downstream 174946 43021194 ~ 43125946 (-)
XLOC_022630 CABZ01066224.1 coding downstream 394364 42884603 ~ 42906528 (-)
XLOC_022629 dlgap4a coding downstream 417370 42836125 ~ 42883522 (-)
XLOC_022628 NA coding downstream 469730 42828633 ~ 42831162 (-)
XLOC_022634 zgc:174862 coding upstream 13666 43320903 ~ 43393589 (-)
XLOC_022635 rprd1b coding upstream 97968 43405205 ~ 43454523 (-)
XLOC_022636 e2f1 coding upstream 160562 43467799 ~ 43486714 (-)
XLOC_022637 CABZ01117597.1 coding upstream 223364 43530601 ~ 43530715 (-)
XLOC_022638 itchb coding upstream 227987 43535224 ~ 43595956 (-)
XLOC_022625 NA non-coding downstream 673450 42622345 ~ 42627442 (-)
XLOC_022640 NA non-coding upstream 358175 43665412 ~ 43668843 (-)
XLOC_022642 NA non-coding upstream 576632 43883869 ~ 43884804 (-)
XLOC_022643 NA non-coding upstream 621261 43928498 ~ 43930231 (-)
XLOC_022644 NA non-coding upstream 682002 43989239 ~ 43992522 (-)

Expression


Co-expression Network