XLOC_022635 (rprd1b)


Basic Information

Item Value
gene id XLOC_022635
gene name rprd1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43405205 ~ 43454523 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044569
ATGTAAAATAGGAATATAGTGTTAcacatttgttacatgtaaaaagatttttattactataatgtattgcctatattaacttgctattatttacttcatcataaattaatgcattatataaattaaacctgtccaaattagatcgttcagcaaggccagcaaacgagtatctactatattattgtcagataataatgactgatcagctatgactgattaaaaactgttcagtctattatatgGCGATCGAAAACAATGCTCCCTACTCGGCCGTCTCGattgcaatatttgtgaaataaagtaaagtaaacactatagtttattgtgtacaatatttattaatcatatatatcaaaatatatcgatgacgatgttcaaaatgacattaataacattaacatccgtcgtaaccatatatggtttgcctagattgtgtgtcctagattgtgtgtgcctaaaacgtgtgtggttctgcgggcctgcagctggatattattggggaTTTGATCCCGTGAATTTGAGGCTGATAATTGGGCAGCCTGCAAAACAGCGTTTTTGTTGTTAAGGAAAGGGCAACATCGCTTTTCTTGTCGCTCAAAACAGCAGTTTTGAGTCTACAGCTCTTCCAATGGGTTGTTTGGTGAGCGCGAGCGGTCAGCATGTCGTCTTTCTCCGAGTCTGCGCTGGAGAAGAAACTGTCTGAACTGAGTAACTCCCAGCAGAGCGTCCAGACTCTGTCTCTGTGGATCATTCACCATCGCAAACATGCAGCGCTCATCGTGCGCGTCTGGCACAGAGAGCTGAAGAAGGCTAAAAGCAGCAGGAAGTTGACGTTCTTGTATCTGGCCAATGATGTGATTCAGAACAGTAAGAAAAAGGGTCCAGAGTTCGCAAAAGACTTCGAAGGCGTCCTGATTGATGCCTGTTCACACGTGGCCAGAGATGGAGACGACGGCTGTAAGAAACAGATGGATAGATTGTTGACTATCTGGCAGGAGAGAAACCTTTATCGTCCAGACTTCATCCAGCAGCTCAAACTGACCATCGACGACTCCGAAAGTCCCAAACACAAAACCGCAGGTCAGAGAAATGCAGATGACAGAAAAAACTTGAAGCGGAGCTACCAGAAGGTccaggaggaagaagaggaggaagatgATGATTACAGAGGTCATTACTCTCCCCGCGAGACAGACGCAGCCGCTCCACAGCTGACGGAGGACCTGGTGAAAGCTCTGCAGGATCTAGAAAACGCTGCTTCAGGAGACGCCGCCGTCAGACAGAAGATCGCATCTCTTCCGCAGGAGGTGCAGGACGTCTCTCTGCTGGAGAAGATAACAGATAAACAGGCAGCAGATAAGCTGTCAAAGACGGTGGACGAGGCCTGTCTGCTGCTGGCTGAATATAATGGACGTCTGGCCGCGGAGCTGGAGGACCGCAGACAACTGGCCCGAATGCTGACCGAATACATACAGAGCCAGAAAGACGCGCTCAACGAAAGAGAGAAGAAGCTGGAGGAATACAAGCAGAAACTGGCTCGTGTCACACAAGTGAGGAAGGAGCTGAAATCACACATCCAGAGTCTTCCAGATCTTTCTCTGCTCCCGAATGTGACGGGCGGCCTGGCTCCGCTGCCGTCTGCTGGAGATCTGTTTTCCACCGACTGAACATTTCATTTCTGAGACTCACAGACACtggcagagcagagcagagcagagcggattaatgataacaataacaaGCGTATGGAGATTTCCAAAACCCGCCGGTCCACTCATCACTAAATCCGACGCCGAGATTTTGTTTTGCCGTGACTTTGCTGTGGAAAGCGACTCTCTTTTGCTTTGTCTGATACCTGTAGGTTTTTAGTTTTTACTGCTCGGATAATAATTTGGCTTCATTTTGGTTTTGGGAGGAGACTAAAGATGAGGATTCAGTTTTAAACCCCATCACTGCTGTAGACCGATATCTGGAGGAATCAATTAGGAAAACTGTGATTATATTTTGGTTACAAACTCAGAGGCGTTTGATTATTTTGCTGATGAAACGCAACAGATGCGCTCGTGTTTGTGAATAAAGGATATACAGTCTGGTTGGGTTTTCTTCTGTGGTCactgtatgttttacagtgtCTTTTCATTAAATACAACTCAACACATTTAACTAACTGCTTTCTGGTTTGAGTGAATCCTTcaattaatttaatgaattttagagtttttaaatgaataattgtgACTAATCGCTAACAAAATGAAAGGTTATATAATAATTTTGTGTGTATTGTATTtgatagaaagatagatggacggacggatggacagacagatatagatagatGCATTGATCGACAGAGATACATTGATCAATAGATAAAAAGATgcatagatggatgaatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataaatggatggatggatggatggatggatggatggatggatggatgcatagatagatggatggatgcatagatagatggatagatagatagatggatggatggatggatggatagatagatagatggatagacggatggatggatagacggatggatggatggatggatggatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatggatggatggatggatggatggatggatggatggatagatagacagatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatggatggatggatggatggatggatggatggatggatggatagatggatggatggatggatggatggatggatggatggatggatagatagatagatatttttatatatacatgtatagaaattgtttatatataacatattattttacataGCAAATTATTTATCATCTTTGTTTTGTATATGATTATTGATGATTATTTGTTAAACAGCAGTACTGGATTGTTGTATCATCAGTGGgtcatttaaatgagattgtgaaGCATCTATGAAATAGGAAGTGGCCAAACTCCCTCCAAATCATTTCTTATGTTAAATTAACAACGCATTAATGTTCATGCTGTTAAACTAAAGTGGTTAATATTCTAAAACTGAACTGCACCTTGATTATTAGGACAGAGCTCTGGTCTGAAGATGGCTGGTGCTGTGGTTTATGGCTGATTCTTGTAATGTATCTGGGTAAGCTAAAagtgaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgattgtatggatgtttccaagtgatgggttgcggctggaagggcatccgctgtgtaaaacatatgctggataagttggcggttcattccgctgtggtgaccccagattaataaacgaactaagccgaaaagaaaatgaaggaatgaatgttgATGTATGACACTTGCATGTACTTTCaagtgaaactgaatattgagtagggggcggggctttctttttaaACATCATTACCTAATAGCAAACCAGTGTAAGAAGGACGTGTTTAGGAATATTGTGGCTGGCGTCAGATAATAACCGTTAAATCCAAATGCAGAggccatagatatttacattagccaccattttagtacagggtagcgctctttTAAAATGATTGTGGGACCAAGATGCAGTAGAGGACTGTCCATCCAGAGCTAGAGATATATACGCGTATAtgcatatatctgtgatcgggaggtcagtatgcaaatatttttttgtaaagtatGAAAGTTATTATTTTGCATCACACATTAATGGATAAGTGATCACGggacaaagagcatgtgtttgtgtgtggaaatgtattatcctacctccctgttaaatttgatctagtCCATGTCCtaaaacacacctcctctcctgctttcactacTCTTTCTAACAGAGGGAGCGATTagcttgtgaatgaatctccgttatgaatgtCTTGCTCACTTAGCCAGC
>TCONS_00044570
ACTACCAGCGTGATCATCATGTCGCGTGTAAATGACGTCACGCGAGACGCGACGGTCGTTTGTTTATCATCAACCCAACTTGCGACCAAATTTGATCGTgttcagacattttttaaaaagtttcgaGGAATCAAAAGACAAGTTTGCGTCTTATTAACGCGATTTAGTAACATTTCGGTTTAAATAAGCGTTCTGACCCGCGGTAGTTCGTATGTGAATGGTTTCCGCGTGTTGTGCCACATTGAAAGTAAATCCAGATTAGCAACCGAACTGCTGACAGGGTTGTTTGGTGAGCGCGAGCGGTCAGCATGTCGTCTTTCTCCGAGTCTGCGCTGGAGAAGAAACTGTCTGAACTGAGTAACTCCCAGCAGAGCGTCCAGACTCTGTCTCTGTGGATCATTCACCATCGCAAACATGCAGCGCTCATCGTGCGCGTCTGGCACAGAGAGCTGAAGAAGGCTAAAAGCAGCAGGAAGTTGACGTTCTTGTATCTGGCCAATGATGTGATTCAGAACAGTAAGAAAAAGGGTCCAGAGTTCGCAAAAGACTTCGAAGGCGTCCTGATTGATGCCTGTTCACACGTGGCCAGAGATGGAGACGACGGCTGTAAGAAACAGATGGATAGATTGTTGACTATCTGGCAGGAGAGAAACCTTTATCGTCCAGACTTCATCCAGCAGCTCAAACTGACCATCGACGACTCCGAAAGTCCCAAACACAAAACCGCAGGTCAGAGAAATGCAGATGACAGAAAAAACTTGAAGCGGAGCTACCAGAAGGTccaggaggaagaagaggaggaagatgATGATTACAGAGGTCATTACTCTCCCCGCGAGACAGACGCAGCCGCTCCACAGCTGACGGAGGACCTGGTGAAAGCTCTGCAGGATCTAGAAAACGCTGCTTCAGGAGACGCCGCCGTCAGACAGAAGATCGCATCTCTTCCGCAGGAGGTGCAGGACGTCTCTCTGCTGGAGAAGATAACAGATAAACAGGCAGCAGATAAGCTGTCAAAGACGGTGGACGAGGCCTGTCTGCTGCTGGCTGAATATAATGGACGTCTGGCCGCGGAGCTGGAGGACCGCAGACAACTGGCCCGAATGCTGACCGAATACATACAGAGCCAGAAAGACGCGCTCAACGAAAGAGAGAAGAAGCTGGAGGAATACAAGCAGAAACTGGCTCGTGTCACACAAGTGAGGAAGGAGCTGAAATCACACATCCAGAGTCTTCCAGATCTTTCTCTGCTCCCGAATGTGACGGGCGGCCTGGCTCCGCTGCCGTCTGCTGGAGATCTGTTTTCCACCGACTGAACATTTCATTTCTGAGACTCACAGACACtggcagagcagagcagagcagagcggattaatgataacaataacaaGCGTATGGAGATTTCCAAAACCCGCCGGTCCACTCATCACTAAATCCGACGCCGAGATTTTGTTTTGCCGTGACTTTGCTGTGGAAAGCGACTCTCTTTTGCTTTGTCTGATACCTGTAGGTTTTTAGTTTTTACTGCTCGGATAATAATTTGGCTTCATTTTGGTTTTGGGAGGAGACTAAAGATGAGGATTCAGTTTTAAACCCCATCACTGCTGTAGACCGATATCTGGAGGAATCAATTAGGAAAACTGTGATTATATTTTGGTTACAAACTCAGAGGCGTTTGATTATTTTGCTGATGAAACGCAACAGATGCGCTCGTGTTTGTGAATAAAGGATATACAGTCTGGTTGGGTTTTCTTCTGTGGTCactgtatgttttacagtgtCTTTTCATTAAATACAACTCAACACATTTAACTAA
>TCONS_00044571
AGCGTTTTTGTTGTTAAGGAAAGGGCAACATCGCTTTTCTTGTCGCTCAAAACAGCAGTTTTGAGTCTACAGCTCTTCCAATGGGTTGTTTGGTGAGCGCGAGCGGTCAGCATGTCGTCTTTCTCCGAGTCTGCGCTGGAGAAGAAACTGTCTGAACTGAGTAACTCCCAGCAGAGCGTCCAGACTCTGTCTCTGTGGATCATTCACCATCGCAAACATGCAGCGCTCATCGTGCGCGTCTGGCACAGAGAGCTGAAGAAGGCTAAAAGCAGCAGGAAGTTGACGTTCTTGTATCTGGCCAATGATGTGATTCAGAACAGTAAGAAAAAGGGTCCAGAGTTCGCAAAAGACTTCGAAGGCGTCCTGATTGATGCCTGTTCACACGTGGCCAGAGATGGAGACGACGGCTGTAAGAAACAGATGGATAGATTGTTGACTATCTGGCAGGAGAGAAACCTTTATCGTCCAGACTTCATCCAGCAGCTCAAACTGACCATCGACGACTCCGAAAGTCCCAAACACAAAACCGCAGGTCAGAGAAATGCAGATGACAGAAAAAACTTGAAGCGGAGCTACCAGAAGGTccaggaggaagaagaggaggaagatgATGATTACAGAGGTCATTACTCTCCCCGCGAGACAGACGCAGCCGCTCCACAGCTGACGGAGGACCTGGTGAAAGCTCTGCAGGATCTAGAAAACGCTGCTTCAGGAGACGCCGCCGTCAGACAGAAGATCGCATCTCTTCCGCAGGAGGTGCAGGACGTCTCTCTGCTGGAGAAGA

Function

symbol description
rprd1b Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPRD1B (regulation of nuclear pre-mRNA domain containing 1B).

GO:

id name namespace
GO:0031124 mRNA 3'-end processing biological_process
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-355 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPRD1B (regulation of nuclear pre-mRNA domain containing 1B).

Ensembl:

ensembl_id ENSDARG00000038113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044569 False 4151 mRNA 0.40 8 43405205 43454523
TCONS_00044570 False 1816 mRNA 0.48 8 43407189 43424510
TCONS_00044571 True 787 mRNA 0.51 6 43410413 43453975

Neighbor

gene id symbol gene type direction distance location
XLOC_022634 zgc:174862 coding downstream 11616 43320903 ~ 43393589 (-)
XLOC_022633 si:rp71-80o10.4 coding downstream 97968 43300892 ~ 43307237 (-)
XLOC_022632 CR545469.1 coding downstream 115754 43244091 ~ 43289451 (-)
XLOC_022631 BX004770.1 coding downstream 279259 43021194 ~ 43125946 (-)
XLOC_022630 CABZ01066224.1 coding downstream 498677 42884603 ~ 42906528 (-)
XLOC_022636 e2f1 coding upstream 13276 43467799 ~ 43486714 (-)
XLOC_022637 CABZ01117597.1 coding upstream 76078 43530601 ~ 43530715 (-)
XLOC_022638 itchb coding upstream 80701 43535224 ~ 43595956 (-)
XLOC_022639 CABZ01117603.1 coding upstream 143438 43597961 ~ 43609595 (-)
XLOC_022640 NA coding upstream 210889 43665412 ~ 43668843 (-)
XLOC_022628 NA non-coding downstream 574043 42828633 ~ 42831162 (-)
XLOC_022625 NA non-coding downstream 777763 42622345 ~ 42627442 (-)
XLOC_022642 NA non-coding upstream 429346 43883869 ~ 43884804 (-)
XLOC_022643 NA non-coding upstream 473975 43928498 ~ 43930231 (-)
XLOC_022644 NA non-coding upstream 534716 43989239 ~ 43992522 (-)

Expression


Co-expression Network