G339254


Basic Information

Item Value
gene id G339254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28385605 ~ 28385890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU383943
gttaagaaggtagagtaaCACTTTATTACGGACAGGCttttccccatcttagctaccgttgtatcaacatgtattgactatgacagtttacaatccagggttactccaagcagtttagtcacctcaacttgctcaatttccacattattcattacgagatgtagttgaggtttagggtttagtgaatgatttgtcccgaGTACAATGCTTTtcgttttggaaatatttaggcctaacttattccttgctacccattctgaaacgaactgcagctctttgttaatgG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383943 True 286 lncRNA 0.39 1 28385605 28385890

Neighbor

gene id symbol gene type direction distance location
LOC110522440 atad2b coding upstream 423238 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 512627 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 621053 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 721186 27624700 ~ 27664419 (+)
LOC118964415 LOC106608050 coding upstream 784041 27537262 ~ 27601564 (+)
LOC110522445 LOC106608054 coding downstream 172310 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 244114 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 313177 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 572194 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 767584 29153474 ~ 29163882 (+)
G338813 NA non-coding upstream 30918 28338033 ~ 28354687 (+)
G338732 NA non-coding upstream 173448 28208964 ~ 28212157 (+)
G338731 NA non-coding upstream 174103 28208397 ~ 28211502 (+)
G338724 NA non-coding upstream 184552 28200418 ~ 28201053 (+)
G338605 NA non-coding upstream 344982 28013024 ~ 28040623 (+)
G339265 NA non-coding downstream 10002 28395892 ~ 28396102 (+)
G339334 LOC100194698 non-coding downstream 105366 28491256 ~ 28497762 (+)
G339362 NA non-coding downstream 159823 28545713 ~ 28552313 (+)
G339376 NA non-coding downstream 185429 28571319 ~ 28572767 (+)
G339562 NA non-coding downstream 270302 28656192 ~ 28656552 (+)
LOC110522355 plekhg1 other upstream 1200635 27054628 ~ 27185449 (+)
G336464 NA other upstream 1490768 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2327914 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3962874 24420114 ~ 24422731 (+)
G339660 NA other downstream 472826 28858716 ~ 28859155 (+)
G339693 NA other downstream 528709 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 780628 29166518 ~ 29166996 (+)
G339928 NA other downstream 949479 29335369 ~ 29336939 (+)
G342538 NA other downstream 2995936 31381826 ~ 31382749 (+)

Expression


Co-expression Network