G339649


Basic Information

Item Value
gene id G339649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28833139 ~ 28833405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384393
atactgtacatttcataacaacatactgtacatttcatAACAACATGCAGTACatttcataacaacatacagtacatttcatAACAACATGCAGTAcattcataacaacatacagtacatttcatAACAACATGCAGTACatttcataacaacatacagtacattcataacAACATGCAGTACATTCATAACAACATGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384393 True 202 lncRNA 0.30 2 28833139 28833405

Neighbor

gene id symbol gene type direction distance location
LOC110522446 bmp2 coding upstream 196626 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 265839 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 870772 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 960161 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 1068587 27757433 ~ 27764552 (+)
LOC110522448 plcb4 coding downstream 124679 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 320069 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 341921 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 349474 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 506131 29339536 ~ 29348164 (+)
G339615 NA non-coding upstream 60038 28772785 ~ 28773101 (+)
G339614 NA non-coding upstream 60670 28772189 ~ 28772469 (+)
G339612 NA non-coding upstream 61509 28771340 ~ 28771630 (+)
G339609 NA non-coding upstream 65153 28767753 ~ 28767986 (+)
G339608 NA non-coding upstream 65727 28767192 ~ 28767412 (+)
G339662 NA non-coding downstream 26539 28859944 ~ 28861067 (+)
G339666 NA non-coding downstream 31162 28864567 ~ 28864930 (+)
G339668 NA non-coding downstream 34521 28867926 ~ 28868245 (+)
G339669 NA non-coding downstream 35917 28869322 ~ 28869537 (+)
G339670 NA non-coding downstream 41167 28874572 ~ 28874791 (+)
LOC118964415 LOC106608050 other upstream 1231583 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1648169 27054628 ~ 27185449 (+)
G336464 NA other upstream 1938302 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2775448 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 4410408 24420114 ~ 24422731 (+)
G339660 NA other downstream 25311 28858716 ~ 28859155 (+)
G339693 NA other downstream 81194 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 333113 29166518 ~ 29166996 (+)
G339928 NA other downstream 501964 29335369 ~ 29336939 (+)
G342538 NA other downstream 2548421 31381826 ~ 31382749 (+)

Expression


Co-expression Network