XLOC_022657 (si:ch73-269m23.5)


Basic Information

Item Value
gene id XLOC_022657
gene name si:ch73-269m23.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 44772661 ~ 44786844 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044601
TATAATACATCCGGACGGACTGCGGCAGCGGCGGCGCGGAGAATGGTGTCCGGCCTGGGTCGCTGTTTGGCGGCTGCGGCGCTGCTGAGTTTCCTGCTGTTCCTCAGCTCTCTCTGGCTGCCTCAAGGGACAGTCCAGGGTTGTGAGGATTCATGGAGGCCTTGTTTGAGTGCGTACAAATCTGCCAAACAGGTGGATCATGCTTCCATTCCGGAGGAGCTTAGAGCAAGTGACTTAATCAGGGAGTGTAACGGACAGAAGTTCCAGGTGTCCCGCCTCCTCCTGCATCTAAACTCCGCCCTCGGCCCCGCCTCTGACGTGCTGCTGGACCCATACCTGCTCTGCTGGGAGGAGCTGATCAAGTTCATGGAGGCTCTGGGTCCTCTGGTGGGATTTTTCACTCATAAAGTTGAAGAGAAGATCGCGCTCATCCGACAGCTCTCACTGGAGGAATCCACCAGACACAGTGTTACCGCTAGCAACAGTATGATGTATGGTGCTCAGCATGAAGCCCCGCCCCCTGGCCACGCCTACCATTCTGTGCATTCGATGCTGGAGGCGGAGCTGCAGAGGGGCGTGGTCTCCTTTGACCAACAGACGCCCTCTGGGAGTCGGACGTTGCTCCGCCTTCATCGTTCATTGCTGTGGTTACAGCTGCTGCTGGAGAAACTGGGGACTGAGCGTGAGGGGCGGAGCTTCGGTGAGCTGTGTCGCGAGGCCTACCTGGAGGTTCTGGCTCCTCATCATCCCTGGCTGGTGCAGCGCGCCGCTGAACTGGTGTTTCACGCAATGCCCGACCGGAGCGTCTTCCTGCAGCTGGTGTGCGTGCGGACACAGGAAGAGGCGGAGCCTGTGATGCGCATTGTTGTTGCAGCGATCCGAGAAATTCACCAAAGGACACAGAGAGAGCTGGAGATCAGAAACATGCTGGACCtgccttaaaggggcagttcacacaaatatttaaatacgCTGTTTATCTCATCACCCTCtgccactgtaaaaaaaaaatctgtaatttttcggtttatttctggcagctagGGTACcgggaaaaaaatgaaaataacagctgttaaattacagaaacatagtgtaaaataatggatattaaattacagaattttgcttaaattaaaatttctggtaaatttcgatgatttaatatccgttattttacagtaaatttctgtaatttaacggttgTTATTTTACGTTTATTTTCGGCACTctagctgctggaaataaaccataaaattacggatAGATGACTTTATATCTTCAGTATGGGCCTGAAGATGGCATACAGaatgtttttttctctccaaCAAGTTATTTTTCCAtggtttttcaatgtaaacacttGCTTGTTGGATGTGTGTGACCGTTACTCTCGCATCTCACATATTTTGAAGCGCTGTGTTTTTTTGGACACTGTGTCAAGTTGAAAGATCTTCAACATTCCTGTGCAGTTCATCACTGTCAGtcccaaagcagtggaccaatcagaaggtGTTGGAGGCGgggccatacctgtcaaccctcccgtttttcccgggattctcccgtattttacagttctatcccgctatcatcctgtaaaggtattttcccatatttcttccGTAATTTCAATCTTTCCATGAAGGGTCGCACAacccataccaccgaaccaccaggggccaccCCTTGCTCTAAAATGTGAATCTGTACTTTCGTTTTATTtagacatgaaaacactttgaaataaaaaataaaaacgg

Function

GO:

id name namespace
GO:0120009 intermembrane lipid transfer biological_process
GO:0035627 ceramide transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0120013 lipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-68 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane.

Ensembl:

ensembl_id ENSDARG00000054218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044601 True 1763 mRNA 0.48 4 44772661 44786844

Neighbor

gene id symbol gene type direction distance location
XLOC_022656 mogat3a coding downstream 49559 44712588 ~ 44723102 (-)
XLOC_022655 kif1c coding downstream 95346 44667616 ~ 44677315 (-)
XLOC_022654 si:ch73-160p18.4 coding downstream 194776 44575669 ~ 44577885 (-)
XLOC_022653 si:ch73-160p18.3 coding downstream 198602 44567210 ~ 44574059 (-)
XLOC_022652 NA coding downstream 206892 44553065 ~ 44565769 (-)
XLOC_022658 NA coding upstream 1123 44787967 ~ 44794448 (-)
XLOC_022659 st8sia7.1 coding upstream 10821 44797665 ~ 44819100 (-)
XLOC_022660 CU682777.1 coding upstream 37239 44824083 ~ 44838839 (-)
XLOC_022661 plod3 coding upstream 57016 44843860 ~ 44879214 (-)
XLOC_022662 fhdc5 coding upstream 114554 44901398 ~ 44903048 (-)
XLOC_022650 NA non-coding downstream 250687 44515199 ~ 44521974 (-)
XLOC_022646 CABZ01071874.1 non-coding downstream 755579 44013682 ~ 44017082 (-)
XLOC_022645 CABZ01071875.1 non-coding downstream 762120 44010425 ~ 44010541 (-)
XLOC_022644 NA non-coding downstream 780139 43989239 ~ 43992522 (-)
XLOC_022666 NA non-coding upstream 245622 45032466 ~ 45035485 (-)
XLOC_022669 NA non-coding upstream 341255 45128099 ~ 45136632 (-)
XLOC_022670 NA non-coding upstream 368199 45155043 ~ 45339439 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location