G339841


Basic Information

Item Value
gene id G339841
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29195811 ~ 29196058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384640
aCTGATGTTAGTAATCTACACGCGTCATGACACATCCTGTGACTGTTTTTCACATACCCTCCAACATCTCCTACTTCTTCAGATGGAACTAAATAGTGAGTCATGTAGTGAATTTTGTTTAAATTCTAGGATGTGTGTAGAGTGTGACCAGATATAGAACCTGTCAAGCCCAATCACAGCCAAGTTATTtgtaacaaaaaaacacattgtaAATGACTGTTTCTGGTTCCAGTTGTGTGTGCAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384640 True 248 lncRNA 0.38 1 29195811 29196058

Neighbor

gene id symbol gene type direction distance location
LOC118964461 NA coding upstream 9774 29182879 ~ 29186037 (+)
LOC118964462 NA coding upstream 18917 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 31929 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 55673 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 261058 28699067 ~ 28934753 (+)
LOC110522451 LOC106608077 coding downstream 143478 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 226236 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 267897 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 284118 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 437618 29633676 ~ 29641117 (+)
G339719 NA non-coding upstream 48911 29142991 ~ 29146900 (+)
G339721 NA non-coding upstream 53460 29142007 ~ 29142351 (+)
G339781 NA non-coding upstream 172358 29016469 ~ 29023453 (+)
G339767 NA non-coding upstream 194697 28998955 ~ 29001114 (+)
G339844 LOC106608064 non-coding downstream 4265 29200323 ~ 29201127 (+)
G339848 NA non-coding downstream 12319 29208377 ~ 29208841 (+)
G339849 NA non-coding downstream 12939 29208997 ~ 29209272 (+)
G339854 NA non-coding downstream 20673 29216731 ~ 29217221 (+)
G339855 NA non-coding downstream 23289 29219347 ~ 29219770 (+)
G339830 LOC100846954 other upstream 28815 29166518 ~ 29166996 (+)
G339693 NA other upstream 280272 28914599 ~ 28915539 (+)
G339660 NA other upstream 336656 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1594255 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 2010841 27054628 ~ 27185449 (+)
G339928 NA other downstream 139311 29335369 ~ 29336939 (+)
G342538 NA other downstream 2185768 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2221897 31417955 ~ 31422086 (+)
G342571 NA other downstream 2255075 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2589807 31785865 ~ 31786206 (+)

Expression


Co-expression Network