G339854


Basic Information

Item Value
gene id G339854
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29216731 ~ 29217221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384653
gggtatgtaaacattatattaagtagcattgtttaaagtggctagtgatatatttgacatcaattcccatcaattcccattattaaagtggctggagttgagtcagtgtgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctttcggtcccagctttgatgcacctgtactgacctcgccttctggaagatagcggggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctgagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgtgggcggagcagttgccgtaccaggcggtgatacagcccgacaggatgctctcgattgtgcaactgtagaagtttgtgagtgcttttggtgacaagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384653 True 491 lncRNA 0.49 1 29216731 29217221

Neighbor

gene id symbol gene type direction distance location
LOC118964461 NA coding upstream 30694 29182879 ~ 29186037 (+)
LOC118964462 NA coding upstream 39837 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 52849 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 76593 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 281978 28699067 ~ 28934753 (+)
LOC110522451 LOC106608077 coding downstream 122315 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 205073 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 246734 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 262955 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 416455 29633676 ~ 29641117 (+)
G339849 NA non-coding upstream 7459 29208997 ~ 29209272 (+)
G339848 NA non-coding upstream 7890 29208377 ~ 29208841 (+)
G339844 LOC106608064 non-coding upstream 15604 29200323 ~ 29201127 (+)
G339841 NA non-coding upstream 20673 29195811 ~ 29196058 (+)
G339855 NA non-coding downstream 2126 29219347 ~ 29219770 (+)
G339856 NA non-coding downstream 3396 29220617 ~ 29220903 (+)
G339864 NA non-coding downstream 16119 29233340 ~ 29233542 (+)
G339862 NA non-coding downstream 112683 29329904 ~ 29362027 (+)
G339859 NA non-coding downstream 113722 29330943 ~ 29363159 (+)
G339830 LOC100846954 other upstream 49735 29166518 ~ 29166996 (+)
G339693 NA other upstream 301192 28914599 ~ 28915539 (+)
G339660 NA other upstream 357576 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1615175 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 2031761 27054628 ~ 27185449 (+)
G339928 NA other downstream 118148 29335369 ~ 29336939 (+)
G342538 NA other downstream 2164605 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2200734 31417955 ~ 31422086 (+)
G342571 NA other downstream 2233912 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2568644 31785865 ~ 31786206 (+)

Expression


Co-expression Network