G340106 (LOC106608094)


Basic Information

Item Value
gene id G340106
gene name LOC106608094
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29683820 ~ 29684213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU384950
ATGCACACCCCAGAACACCAATTTAATCACAAAGTGCCTTACAAAACACTGTCTTGATATAGTGTCTCAACATCTGTAATTGAATGGAACATTATTGTCTCATCATTCACAACTAATGTCATCTTACAaacaacacactgacagacagCTCATTCATTCATGTTTCTTTTATCAGACGGACAGATTCCATTCATTGTTTCCTGTCGAGGAACTGTGTGTAGGTGAAGGAATCGGCCCAGTCCCCTGTTCTGCTCTTCTTCTCCAGGAACAGGCCCATGCTGTCTCTGGGGGGGTCTGCGATGCTGCGGCTCCACAGCGGCTCTGATGTCCCCAGCAGCTCACGCACATGGGCAGAGATGGCCTACAGGGGGGTATAACACAGGGAGGAGGAGCT

Function

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384950 True 394 lncRNA 0.48 1 29683820 29684213

Neighbor

gene id symbol gene type direction distance location
LOC110522456 LOC106608096 coding upstream 42703 29633676 ~ 29641117 (+)
LOC110522454 LOC105017530 coding upstream 51449 29480176 ~ 29632371 (+)
LOC110522453 LOC106608073 coding upstream 205614 29463955 ~ 29478206 (+)
LOC110522452 LOC106608075 coding upstream 222438 29422294 ~ 29461382 (+)
LOC110522451 LOC106608077 coding upstream 335656 29339536 ~ 29348164 (+)
LOC110522458 mmsa coding downstream 1819 29686032 ~ 29706801 (+)
LOC110522461 LOC106608092 coding downstream 33565 29717778 ~ 29727201 (+)
LOC110522463 LOC106608087 coding downstream 103355 29787568 ~ 29798140 (+)
LOC110522467 LOC106608085 coding downstream 154156 29838369 ~ 29842910 (+)
LOC110522470 prpf39 coding downstream 257963 29942176 ~ 29952127 (+)
G340081 NA non-coding upstream 36036 29647462 ~ 29647784 (+)
G340011 NA non-coding upstream 185286 29498147 ~ 29498534 (+)
G339859 NA non-coding upstream 320661 29330943 ~ 29363159 (+)
G340107 NA non-coding downstream 1139 29685352 ~ 29685606 (+)
G340125 LOC106608091 non-coding downstream 53780 29737993 ~ 29738401 (+)
G340153 NA non-coding downstream 85593 29769806 ~ 29770443 (+)
G340155 NA non-coding downstream 114046 29798259 ~ 29803141 (+)
G340182 NA non-coding downstream 142058 29826271 ~ 29826549 (+)
G339928 NA other upstream 346881 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 516824 29166518 ~ 29166996 (+)
G339693 NA other upstream 768281 28914599 ~ 28915539 (+)
G339660 NA other upstream 824665 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2082264 27537262 ~ 27601564 (+)
G342538 NA other downstream 1697613 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1733742 31417955 ~ 31422086 (+)
G342571 NA other downstream 1766920 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2101652 31785865 ~ 31786206 (+)
G343958 NA other downstream 3010773 32694986 ~ 32704371 (+)

Expression


Co-expression Network