G340227


Basic Information

Item Value
gene id G340227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29903591 ~ 29907479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU385092
gggaaagcgtccgtgcgtttggacaattaatagacactgcagtaaattaatcagaataaaaacatctgtcttgtccaggaccggaGTCTACACAGACTGGCGCGCTATTGCCAATCAGAGCAACAGTAGGCCTTTatacaaacaagccatttgccacatgGGCCTGCTAACATTCGCTTTGAACTGGTCTTTACAGGAAGTTGCAACAGCgcaactttagatcattagaacgcattcgccaaaagccacctgaatgaatttctgcaaatatgtaaacaccacgggagtcctcttacattttgAAACTtattctgcagcttgcctgccaatgcatgcttgtcccaaccaagcacccaagctaactggctaaagttggctagctttctagctagccaactacttccagacacaaatgagagaacaccttaTTTTACTCgccgtagcagagctggttagccTGTTAACATGTTTCTAGAGCATTCCTGATTCACTATTACTTTTTTTGTCTACGTTTACACCGGTCACATTCAGCTGCTGTTGCACATTCGTAAATTCTTCAGTTGTTCTGCGCACTgacacactcagatgagagtgctctgaatcGGAGTAGATAGCATATCTTTTGCATTTGCAAATTCATTCTGGCTAACTGGATAACAATGATTtaagttcttgctagctaaccaaatgacacctgcatctctagctgtgtatagcTACCGAAAAACGATATGAGGGGAAAAAGTCAGTCACTAACCCACTTCTCCAATGGCATGGCATCCTCCTAGCAGTTAGCTAGCATTAGGCTCTGTGTTTTTATcttgctacataaatagataccCTAGCCTCTATTAGCCACATTATGACTGACTtatgatcattgcccttgctagtttgattatattgacattcccagccttagttacattcgtcCGTTTTTGTCCAGAATATTGAGTAAGTGCAACccgaatggaggcagcaaacaatgtaccagtccagctgtgatttacaacctcaTAGCAATATTTTTAGGACTACCatgaaatgtattggtgaatcatattaatcatgcattgaactgcatccatctattctgccaacaatgcttAGTTTATGTCATGGAACGTTGAGTCTAATATAACCtgtttttaaaacctcttataaagttggttttgtagcataaactgggaattgtATATTTTTTACTGATATgattgtttgtttcatatctgcaaagtagttaaaatgcTGTCACTTCCACTTTAAACTTTAGATCACcggttactttttttttttttttgcaatgggaagtaatagttGTACATTTCGATTGGGAAATGCTCAAcggttgtgtttttgtattcttatgaTTGGCACCTAGTGGCTTATTATGTCCGAGGTTATGGACCGCCTATCCTTTAACATCATGTTGTATGTTACTGCTGTCTTTCCATtggccctatgcagtggtgtagggaaagggggatacctagtcagttgtacaactgaatgcattcacctGCAATGTGTCTTccgcttttaacccaacccctctgaatcagaggcgCGGAGGGCtgcctctctgggatatgtgggacggtagcgtcccacctggccaacatccagtgaaaatgcagcgcgccaaattcaaataaattactataaaaattaaactttgatgaaatcacacattcaatataccaaattaaagctacacttgttgtgaatccagccaacgtgtcagatttaaaaaatgcttcatggtgaaagcaaacaatgctattatctgaggatagcaccccagtaaacagagagaaaagcatatttcaaccctgcaggcgcgacacaaaacgcagaaataaaaatataattcatgccttacctttgacgagcttcttctgttggcactccaatatgtcccataaacatcacaaatggtccttttgttcgattaattccatcgatatatatccaaaatgtccatttatttggcgcgtttgatccagaaaaacaccggtaccaacttgcgcaacgtgactacaaaatatctcaaaagttacctgtaagcaTTGTCTAAACATTTCaaattacttttgtaatacaactttaggtattttttaacgtaaataatcaataaaattgaagacgggatatactgtgttcaataccgaaggaaaacaaagtggagcgtgcTTTCAGGTCATGCGCCTCTAACAAAGAGTACACTTCCCTCGAGCCTCATTCTGAACAGtgttacttcttcatttctcaaaggaaaaacctcaaccaatttctaaagactgctgacatccagtggaagcgataggaactacAGGAAAGTggattagaaatctggattcccaatgaaaacccattgaaaagagtgaaCTCAAAACAAATTGAacggtttgtcctcggggtttcgcctgccaaataagttctgttatactcacagacatgattgaaacagttttagaaacttcagagtgtatgcatatcttatcttctgggtgtgagtagcaggccgtttactttggacacacttttcatccggacatgaaaatactgcccccggtcccaaagaagttaatcgACAGCCACGTCGTCAGCACCCGgagaacattgggttaactgccttgctcaggggcagaatgacagattttttaccttgtcattaagtaaccttttggttactggcccaacgcgccAACCTGCCAggctggagaagtgggtatacacagattttgccaaaaagttcccaATTGGCCTGCCCAGCGAAGGAAAGGCACCCTGTGTGAGTTTTTCCAGATTATTTTTTTAATGCAAAAATTTGAtggtccacaacaatgcttaaatcacatcaATTTGATTTGGTGGGCCTGttagggcctggctccccagtggatgggcctcTGTCCACCGAGGCCCATCCATGTCTACACCCCTGATGCAAACAGTGCATGATGACAATTGCACATCACAAATAGCCTACTTACCAACACTTTGGACTAAACTTTTTAaatacctggtttgcatacccattgttgcCTTAGTTAACATTTACTGGTAGATATCTTAAATTGTAAATGTCTTTCCGACCCCACCAGCTACCAATGTCATTCTTCTGTGAGTTGCTCCATGCCAAAACCAGTTGAGCGCTGCACTTTCTTGCTGCCTGCAGATGATATTCTGCTGAAACTAGGCTGTGTGCGGCGTGCATGTGAATATATTTCACGTGCTTTGCGATTGTGTAGACTATGTTGGGCAtgactactctactgtactacatACTTGATAAGTagtatacctccactacactactttggtACGCATCAGTAGGGATTAATAAGTGAGTATACACAATGCCCATTGAAAACAAAGTGGGTATACggctccactacaccactggccctttgtgttttacaaaaagtACACTGTCCTACATGAGTGCGCTGGTATTATggttgctgtcctttcagaatcaccaacctgtcacacactgaaggcctattaGGTTCGCCACTGAGCAAACATGTCTATAATAGATATTAAGGCTGTTAAGAGACTGTATTAATGTTACAAGAAAGgagtgtatatatttggcctggCGAAGCGGTTTTATGCGCTAATGGAATGGAAGCTAATAAGAGTTTTTTTTACTCTGCTGGTCTCGGGAAGAAATTAGTACAAATGTATTCAAATCATAtctaattgtattagtcacatgcgccgaggtgtagaccatacagtgaaatgcttacttacgagtcccTAACCAACActgcagttaaaaaaatatgaataagaaataaaagcaacaagtaattaaagagcagcagtaaaataatagcGAGACTTTATACGGGGGGTACGggtagagtcaatgtgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385092 True 3889 lncRNA 0.41 1 29903591 29907479

Neighbor

gene id symbol gene type direction distance location
LOC110522467 LOC106608085 coding upstream 60681 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 105451 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 176390 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 196790 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 262474 29633676 ~ 29641117 (+)
LOC110522470 prpf39 coding downstream 34697 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 44982 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 888740 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 908937 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 1262172 31169651 ~ 31182712 (+)
G340223 NA non-coding upstream 5147 29898125 ~ 29898444 (+)
G340224 NA non-coding upstream 7415 29895792 ~ 29896176 (+)
G340225 NA non-coding upstream 9178 29893748 ~ 29894413 (+)
G340201 LOC107574485 non-coding upstream 13072 29859098 ~ 29890519 (+)
G340219 LOC106608084 non-coding upstream 15823 29883803 ~ 29887768 (+)
G340226 NA non-coding downstream 3159 29910638 ~ 29914232 (+)
G340238 NA non-coding downstream 19849 29927328 ~ 29927607 (+)
G340240 NA non-coding downstream 21716 29929195 ~ 29929455 (+)
G340242 NA non-coding downstream 24346 29931825 ~ 29932303 (+)
G340243 NA non-coding downstream 24997 29932476 ~ 29932695 (+)
G339928 NA other upstream 566652 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 736595 29166518 ~ 29166996 (+)
G339693 NA other upstream 988052 28914599 ~ 28915539 (+)
G339660 NA other upstream 1044436 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2302035 27537262 ~ 27601564 (+)
G342538 NA other downstream 1474347 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1510476 31417955 ~ 31422086 (+)
G342571 NA other downstream 1543654 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1878386 31785865 ~ 31786206 (+)
G343958 NA other downstream 2787507 32694986 ~ 32704371 (+)

Expression


Co-expression Network