G352092


Basic Information

Item Value
gene id G352092
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40888241 ~ 40892813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU398658
agAAGTCTACTGTCCAAAAAAGGCACTAAATTCTGAAATGGGCAAAATAGTAATTCAGAAGATAACTATTGGAGATAGATTGATACAACACCATTCAGTCTTATTTTGAAAGAGCTATATTGAAGGTCTTATTTACTGGGagacaggagacatggaggaaaGTGTAGCTATGTCTGAACCTTTACCCTGCCCTTCAGGGGCAGACTGGGAAAAGAAATCAGccctggcatttctaacacactggcccattttttaaaattttcttTCATTGAAGCACCCACAGTGgcgcattttttgttgttgttgcctgatgCCTCCCATTATGAGCCAAATAACAATCATTCTCCGCAATGACCCCCAATTTAGTCAGGCCCGCTGGGCTAAAGATGGACTAACTTATCTGGCATTGGCCTGAATTGGTTCGAAACACCCAGCCGATCACATAAAGTAGTAATTTGTTTTTTTACCTGAATACTGCTAGAATGTTCTAGCATACAGGACCTGTACCACAGCACCCCTTCAGGTCAGGAGGTGCTACTACAGGAAAGTACATAACAGGACAATTCACCTGCAATAGAGGTGGGCTATGCTTTCACACAATACACTATCGTGTCATCTCAAATCACACACATGGAAACTGATCTTCATGAGACGGGGATAACAAACAATGGAATCAAAAGAAAACAAAATCAAGAAACGATTGATTTCACAATAAAAGCACAATGTTCATTTCCAAACATATCATCCTTGTCTTAGTGTTAACACTGTAAGAACATAAAAACTAAATATAAATTACACTTGCATTTCTTTTCTTTACCCCTTCTTTTCTTCAAGGACAAAAAAACCCAGCGCAGAGTTAGGGCTCGAGTCTAGCAGAGCTTCAACTCAGGAGCAGCAgaattcaatatatatatatatgtgaaaaGTGTATTTAATCTGACTGGTGTTACATATAAAACACCAGTCAGATTAAATATGCTTTTCACACTATAGGGCCCGAACCAAACTGTGCTGGCTTAGATATTTGCCTTTAACATGGTCCTTTTCCAGCACGTTCCAAACAACTATGATGGATGCCAAACCTGGCCAGAGCAGTACCTCGCCGCTTAGCTCCGCTTCAATCAGAAACGTGAAAAAGGGTCAACCAGTCTTTTAAAAGCACGTATTTCTTTTAACACTACTAAGAGGCAGCCATCTTAAGAGTAAGTAGTAATAGGTAGAGATAAAATGTTGCCCAGGTTTTCATCTTTAAGAAGTAGTCGCTAAGCAGAGAGGGTTTCGAAAACGTGTTGGCAGGTCGGTAAGACACAGTATTCTCTTTAGAGTGGTTGCTGTAACTCTAAACAACACATGGAACTGTCTGCTCTATCATAGACTATATCAATTGTTCTCTCTACGGTACCCatacagcacccccccccccctcacttacaggtaactgtcaaaataaaagGAAATACCTACAAAGTGCCTTAATAgggccaccagaacagcttcaatgcaccttggcatagattctagtgtctggaactctattggagggacgTGACACCAATTTCTTCCACGAgaaaattccatcatttggtgttatgttgatggtggtggaataACACCGTCTCAGGCGACAGTCCAGAACCTCACGTAAGTGATCAATTGAGGTTGAGATCTGGTTTACATGGTTTTCGCGCTCATCGAATCAATCAGTGCCCACTCGTACCCTGTGGATGgggacattgtcatcctatgggggggggggggcatagccatggtaacAGGCCACACAGCATTTTTTATACATGACGCTAAGCAtgagatgttaattgcttaattcaTTCAGgagccacacctgtgtggaagcacctgcttttgTTTCCCTCCTTTAGGTAGTTACTTGAATATCCATCGTGTCTGCCAGTTCATCTAACGGTGGTCTCACACTCAattccacagagggccgagtgtctTCAGGTTCACTTCTCCTTTGTACGTGATCGATTAAACAacgctacctaatataatgtttacataccctacattattcatctcatatgcatacgtatatactgtactctatatcatcgactgcatccttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatttcatatgtgtatactgcactcgataccatctactgtatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatcccctcacactgtgtataagacagtagttttggaattgttagttagattacttgttagatattactgaatagtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataacatttgatttgatcagttaAGGTTATTGATTAGTTAGTAACTCCCCTCACCtgattgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatagaTTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTGAGTAACTCCCCTCACctagttgtctaggtcttaataggACCCAACCTGAAAGGAAATAACAAAAACCAGTAGACACACGTCCCTCCAGGAATTGAGTTTATAACAGGAGTCAACAGCTTTGTACTGTTGTACATATTTCACACATTGCCTCCAATGGACTTAACGCATCTCATCAATGGACTGATCTTAGTGCTATACGAAGCTTTTAGGAAAGTCACCCGTTGTTAATTACTGTAGCTAATTCACTTTGGATAAACTGAACCCTTAAAgaccaaaaaaaacatttcccccCTTTTGCAGGGCTCTCCGGTCAGTTTGAAAAGCTCAGACAGCACATTTTATCCACTGAAATCATATGATTAAACTGACCAAGAGTCAGTTTATATACTttatctggggtgtattcattagtcacactgtagcaaaatgttttgcaacagaaaccaTTCACTCCAAAACAGTATAAAGTTTGCAATTAAAAACTAGTTTATTTTTTGGACAAATTCAGCTAGGTTCCTCCCCGTTCTGCTCGGTTTCCGTCCGTTTGGTTTCATAGTGAACGTGACCCTGTTCTAACATCTCATCTGGTGGCGGATGATACTTCGGACTTTCCCATTTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGATTGCTTTTTGCCACCTGCACATAATTGTCCGTTAATTTCTGCTGGCCGTTGGATTCAAAACAACACATGGGCAATGGTACCGGAACACATGGGCAATGGTACCAGAACAAAACAAATTATAACGTCAAAAACAATGTCGAtgtttacaacaaaaaaaaaccgTTAAGATTCCAGTAGGAATGAAAGCTCTACAGTGCAGGATACAtggaacagtacagaacagtctaGTCCAAATCAGAACAGTCCAATCCACAAACAGTTCTCAACTGACTGTTCTGTGTGACAGGGTGACAGACTAAATCCATCcattcattcctctctctctcagaattATTAGTAAGAGACCACAGCTGCTCTGCCAATGCATTGCACAAGGAAAGGGGTTCAGGGTAACTCGGTGATGAAGGAGCATGAGAACCATAGAAATAACAGaacttctattctattctagaaTCATGTCTCTGATGAGAACCATATATAcgcactgctactgctgctcccAGGCAGGGTTGAGGTTAGTGATGCTGGGATCAGGGCTAGTGGCACCATGTTGGGGAAAGGTCTAGAAAACCAGCCTGTGACGAGGACAGGGTAGACTGGGGCTGTGATGAGGACAGGGTAGACTGGGGCTGTGATGAGGACAGGGTAGACTGGGGCTGTGACGAGGGCAGGGTAGACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGATGAGGACAGGGTACACTGGGGCTGTGACGAGGGCAGGGCAGggtacacTGGGGCTGTGACgaggacagggcagggtacaCTGGGGCTGTGacgaggacaggacagggtacaCGTCCAGTAACCACCTCCCCAGTCATTGTTCAGTAa
>TU398659
agAAGTCTACTGTCCAAAAAAGGCACTAAATTCTGAAATGGGCAAAATAGTAATTCAGAAGATAACTATTGGAGATAGATTGATACAACACCATTCAGTCTTATTTTGAAAGAGCTATATTGAAGGTCTTATTTACTGGGagacaggagacatggaggaaaGTGTAGCTATGTCTGAACCTTTACCCTGCCCTTCAGGGGCAGACTGGGAAAAGAAATCAGccctggcatttctaacacactggcccattttttaaaattttcttTCATTGAAGCACCCACAGTGgcgcattttttgttgttgttgcctgatgCCTCCCATTATGAGCCAAATAACAATCATTCTCCGCAATGACCCCCAATTTAGTCAGGCCCGCTGGGCTAAAGATGGACTAACTTATCTGGCATTGGCCTGAATTGGTTCGAAACACCCAGCCGATCACATAAAGTAGTAATTTGTTTTTTTACCTGAATACTGCTAGAATGTTCTAGCATACAGGACCTGTACCACAGCACCCCTTCAGGTCAGGAGGTGCTACTACAGGAAAGTACATAACAGGACAATTCACCTGCAATAGAGGTGGGCTATGCTTTCACACAATACACTATCGTGTCATCTCAAATCACACACATGGAAACTGATCTTCATGAGACGGGGATAACAAACAATGGAATCAAAAGAAAACAAAATCAAGAAACGATTGATTTCACAATAAAAGCACAATGTTCATTTCCAAACATATCATCCTTGTCTTAGTGTTAACACTGTAAGAACATAAAAACTAAATATAAATTACACTTGCATTTCTTTTCTTTACCCCTTCTTTTCTTCAAGGACAAAAAAACCCAGCGCAGAGTTAGGGCTCGAGTCTAGCAGAGCTTCAACTCAGGAGCAGCAgaattcaatatatatatatatgtgaaaaGTGTATTTAATCTGACTGGTGTTACATATAAAACACCAGTCAGATTAAATATGCTTTTCACACTATAGGGCCCGAACCAAACTGTGCTGGCTTAGATATTTGCCTTTAACATGGTCCTTTTCCAGCACGTTCCAAACAACTATGATGGATGCCAAACCTGGCCAGAGCAGTACCTCGCCGCTTAGCTCCGCTTCAATCAGAAACGTGAAAAAGGGTCAACCAGTCTTTTAAAAGCACGTATTTCTTTTAACACTACTAAGAGGCAGCCATCTTAAGAGTAAGTAGTAATAGGTAGAGATAAAATGTTGCCCAGGTTTTCATCTTTAAGAAGTAGTCGCTAAGCAGAGAGGGTTTCGAAAACGTGTTGGCAGGTCGGTAAGACACAGTATTCTCTTTAGAGTGGTTGCTGTAACTCTAAACAACACATGGAACTGTCTGCTCTATCATAGACTATATCAATTGTTCTCTCTACGGTACCCatacagcacccccccccccctcacttacaggtaactgtcaaaataaaagGAAATACCTACAAAGTGCCTTAATAgggccaccagaacagcttcaatgcaccttggcatagattctagtgtctggaactctattggagggacgTGACACCAATTTCTTCCACGAgaaaattccatcatttggtgttatgttgatggtggtggaataACACCGTCTCAGGCGACAGTCCAGAACCTCACGTAAGTGATCAATTGAGGTTGAGATCTGGTTTACATGGTTTTCGCGCTCATCGAATCAATCAGTGCCCACTCGTACCCTGTGGATGgggacattgtcatcctatgggggggggggggcatagccatggtaacAGGCCACACAGCATTTTTTATACATGACGCTAAGCAtgagatgttaattgcttaattcaTTCAGgagccacacctgtgtggaagcacctgcttttgTTTCCCTCCTTTAGGTAGTTACTTGAATATCCATCGTGTCTGCCAGTTCATCTAACGGTGGTCTCACACTCAattccacagagggccgagtgtctTCAGGTTCACTTCTCCTTTGTACGTGATCGATTAAACAacgctacctaatataatgtttacataccctacattattcatctcatatgcatacgtatatactgtactctatatcatcgactgcatccttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatttcatatgtgtatactgcactcgataccatctactgtatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatcccctcacactgtgtataagacagtagttttggaattgttagttagattacttgttagatattactgaatagtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataacatttgatttgatcagttaAGGTTATTGATTAGTTAGTAACTCCCCTCACCtgattgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTagtaactcccctcacctggttgtctaggtcttaatagaTTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTAGtaactctcctcacctggttgtctaggtcttaatagaTTAGTTagtaactcccctcacctggttgtctaggtcttaatatATTAGTGAGTAACTCCCCTCACctagttgtctaggtcttaataggACCCAACCTGAAAGGAAATAACAAAAACCAGTAGACACACGTCCCTCCAGGAATTGAGTTTATAACAGGAGTCAACAGCTTTGTACTGTTGTACATATTTCACACATTGCCTCCAATGGACTTAACGCATCTCATCAATGGACTGATCTTAGTGCTATACGAAGCTTTTAGGAAAGTCACCCGTTGTTAATTACTGTAGCTAATTCACTTTGGATAAACTGAACCCTTAAAgaccaaaaaaaacatttcccccCTTTTGCAGGGCTCTCCGGTCAGTTTGAAAAGCTCAGACAGCACATTTTATCCACTGAAATCATATGATTAAACTGACCAAGAGTCAGTTTATATACTttatctggggtgtattcattagtcacactgtagcaaaatgttttgcaacagaaaccaTTCACTCCAAAACAGTATAAAGTTTGCAATTAAAAACTAGTTTATTTTTTGGACAAATTCAGCTAGGTTCCTCCCCGTTCTGCTCGGTTTCCGTCCGTTTGGTTTCATAGTGAACGTGACCCTGTTCTAACATCTCATCTGGTGGCGGATGATACTTCGGACTTTCCCATTTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGAATGCCTCAGATTGCTTTTTGCCACCTGCACATAATTGTCCGTTAATTTCTGCTGGCCGTTGGATTCAAAACAACACATGGGCAATGGTACCAGAACACATGGGCAATGGTACCAGAACAAAACAAATTATAACGTCAAAAACAATGTCGAtgtttacaacaaaaaaaaaccgTTAAGATTCCAGTAGGAATGAAAGCTCTACAGTGCAGGATACAtggaacagtacagaacagtctaGTCCAAATCAGAACAGTCCAATCCACAAACAGTTCTCAACTGACTGTTCTGTGTGACAGGGTGACAGACTAAATCCATCcattcattcctctctctctcagaattATTAGTAAGAGACCACAGCTGCTCTGCCAATGCATTGCACAAGGAAAGGGGTTCAGGGTAACTCGGTGATGAAGGAGCATGAGAACCATAGAAATAACAGaacttctattctattctagaaTCATGTCTCTGATGAGAACCATATATAcgcactgctactgctgctcccAGGCAGGGTTGAGGTTAGTGATGCTGGGATCAGGGCTAGTGGCACCATGTTGGGGAAAGGTCTAGAAAACCAGCCTGTGACGAGGACAGGGTAGACTGGGGCTGTGATGAGGACAGGGTAGACTGGGGCTGTGACGAGGGCAGGGTAGACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGACGAGGACAGGGTACACTGGGGCTGTGATGAGGACAGGGTACACTGGGGCTGTGACGAGGGCAGGGCAcaCTGGGGCTGTGacgaggacaggacagggtacaCGTCCAGTAACCACCTCCCCAGTCATTGTTCAGTAa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398658 False 4519 lncRNA 0.43 3 40888241 40892813
TU398659 True 4455 lncRNA 0.42 4 40888241 40892813

Neighbor

gene id symbol gene type direction distance location
elp3 elp3 coding downstream 110094 40751754 ~ 40778147 (-)
LOC110521110 LOC106608312 coding downstream 193963 40678164 ~ 40694278 (-)
LOC118964398 NA coding downstream 275961 40610955 ~ 40612280 (-)
LOC110522612 LOC106608279 coding downstream 398007 40484102 ~ 40490234 (-)
LOC110522601 NA coding downstream 430195 40456529 ~ 40458046 (-)
LOC110522630 LOC106608306 coding upstream 206 40893019 ~ 40913253 (-)
LOC110522633 LOC106608304 coding upstream 55542 40948355 ~ 40978151 (-)
LOC110521112 LOC106608303 coding upstream 90043 40982406 ~ 40990428 (-)
LOC110522634 LOC106608299 coding upstream 162441 41055254 ~ 41071087 (-)
LOC110522635 ylpm1 coding upstream 197522 41090335 ~ 41154170 (-)
G352082 NA non-coding downstream 12774 40873644 ~ 40875467 (-)
G352081 NA non-coding downstream 15526 40870348 ~ 40872715 (-)
G352079 LOC106608288 non-coding downstream 20079 40865032 ~ 40868162 (-)
G352078 LOC106608288 non-coding downstream 23365 40863418 ~ 40864876 (-)
G352058 NA non-coding downstream 51334 40834062 ~ 40836907 (-)
G352103 NA non-coding upstream 29406 40922219 ~ 40925985 (-)
G352106 NA non-coding upstream 34841 40927654 ~ 40928784 (-)
G352108 NA non-coding upstream 43963 40936776 ~ 40940569 (-)
G352111 NA non-coding upstream 49393 40942206 ~ 40942906 (-)
G352110 NA non-coding upstream 51880 40944693 ~ 40945238 (-)
G351896 NA other downstream 210127 40677466 ~ 40678114 (-)
G351886 NA other downstream 222763 40665092 ~ 40665478 (-)
G351054 NA other downstream 1169110 39718784 ~ 39719131 (-)
G350563 LOC106608153 other downstream 1737004 39150509 ~ 39151237 (-)
G350352 LOC106608159 other downstream 2002359 38884352 ~ 38885882 (-)
G352537 NA other upstream 529434 41422247 ~ 41422752 (-)
G352723 NA other upstream 635155 41527968 ~ 41529100 (-)
LOC110522638 LOC106608314 other upstream 684757 41577166 ~ 41586944 (-)
G352722 NA other upstream 697576 41543179 ~ 41686007 (-)
G352818 NA other upstream 718700 41611513 ~ 41611982 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G183191 NA non-coding NC_053129.1 CM020926.1 9327399 ~ 9328688 (+)
bowfin (Amia calva) G2721 NA non-coding CM030121.1 CM030121.1 16085140 ~ 16085992 (+)
bowfin (Amia calva) G92819 LOC106577813,LOC107691980,LOC107742267 non-coding CM030131.1 CM030131.1 20757206 ~ 20757443 (+)
mexican tetra (Astyanax mexicanus) G85990 NA non-coding NC_035905.1 CM008308.1 35879880 ~ 35946282 (+)