LOC110518653 (LOC106566474)


Basic Information

Item Value
gene id LOC110518653
gene name LOC106566474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28257967 ~ 28261576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977197.1
gaggattgattataaaaattctttgccatgtttctgtcgatattatggatataatttggattttttttcgccgttgtcgtgaccgctatttccgttGGATTTCTCAACATAATGTGACCAACAAACAACTTTATTTGATCAATTAATCACAAGAGTTCTCATATTTGAAATAGCTGTGCTGTAGTTACCTATATTTTCAGTAAGTTTAATGTAGGGTGGACCACATGGACAGCCCCTTAGTGGTCAATGAAAATAAGGTCATTTTCTTCAGCCTCACTAGTGATCTGTCACAACATCACTCGTGAGTCTCCATATCCTCCTCTGTAGGTTTTTCTGTGTCCTACCAAACACACATCAGTTTTCTGACATGACAGTCTATGTGTGGAGTTCACTTCACTGACGGAAGAaagtggaaaatatgtatttttcttttatTCTTCTCATTTATGTTGCCGGTGTTGCGGTAAAAGAAAGTTGTGCAGATTTGGTTCCCACTCCCACTATTGTATTTTCCCCTGGGTACATCAATATagctacacctgctacagtacgaTGTGAGTCACCAAAAGGCACAGAGTGCAAATTCTACAAAGATCATGACCCCAACCCTATAAGGAAACTGGATTACAAGCAGGGTGCTTGCCAGTTCAAGTTGCTCTGGAATGAGTTCAAAAGGTGGAACAAGACTGAAGTAGATCTCAGCTGTGTAATTCTACAGAACAGAGAAGGTGAAACGATCAAAACCTCAAAACCTAGTGATGCTCGAAGACTTAATGTGGGTGATCCAATTGGAAAGCCCATTGTTCAGGTGTTGAAGATTGGGAATTACCTCAATCTTCGATGTGAGGCCAAGGCTGGCACCTCATGCTACTTTTATCTGAACAATGGTGACTCACACTTTAAAAAACGACCCTACAAAGACAATGTCTGTGTGGGGAGAGTGGCAGAAGAGGAACtgcagaggaagaggagcagtGCTGGAGAGATCTTCATCACCTGTGCTGTGGAGCTGGTGGTAGAGGGTGAAGATACTGTGACATCACAGCATAGTGAACCCCTCGGTATCACCATAGATGTTATAAATCCTCCAGGAGCTACTAGTTCCCCATCAACGTTCAGTTTACCTGTTCAGAATGAGAAAAGCAACGATACCACAGCCCAAGGAAGAGGTCCAGGGTTCCTCGTCGTCATCAGTCTGGGTGCTGGTTCCCTTTTCCTGATTCTGCTAGCTGGGTCTGTGCTGTGTGTTCTCCAACGCAAGTGTGGGGTTCAAGGCAGGCCTGTAAATACTGGAAGCCCACCTGAACAGCAAGACCAAACCCCACCTTGTGTCTATTCTGTCATCACAAAGCCTTCTAGGGATGAGGAAGAGGACACTAGTCTGCAATACGCTACAGTGACATATACCGGTGACCAAGCTAGTCGTCAATATGCAACAGTGACATCTACCGGTAACCAAGTTGGACCTGGGCGCACCAAGATCAAGTTTGAAATAGCTGGAGAGTACGCCCTCTTAGCAGAATCATAGAAGAAGAAACATTTACTGGATAACATGTTTTGCCATAGTTCACAGTTACAATCCTATATTTTGTTTTCATATTGGATCATAATTTACTCATAGTACAAAAACAAATCCTGCCACAACATCAAAGACTAAAGATATCTACTCAACTATTTGCATTTTAggttaaatgaaataaatgaaaagTACACTGTCTGAaacataaaataaatattttcctTCATTGAGTTACCGAATCTAGTCAGCAGTCACCAATCAGTAGTCACCAATCTATTTCACTCCTTGACAAGAGTCAATATAGACTCAAAGCCACAAGAGGGTAGAACACATGTCAAACTTTGCTTGTtacatctctacatctctctctctacatcgctCTCTTTAACCATGTCTGGTGTATATTAgttttcagtggtggaaaaagtactcaacaaacatacttaagtaaaagtaaagataccttcatagaaaatgactcaagtaatagtaaaagtcacccagtaaaattctacttgtgTAAAAGTCTATAAGTATTTGATttaaaatatacttcagtatcaaaagtgaATGTATAactcatttcaaattccttatctTAAGCAAACCAGAATGCACCATTTTCTTTTTATTCTTCTTTTTTGCAGAaggccaggggcacactccatcactcagccATCAGTTACAAACAAATCATGTcagtttagtgagtctgccagatcagaggcagtagggatgacaagggatgttcggctg
>XM_036977198.1
ggattgattataaaaattctttgccatgtttctgtcgatattatggatataatttggattttttttcgccgttgtcgtgaccgctatttccgttGGATTTCTCAACATAATGTGACCAACAAACAACTTTATTTGATCAATTAATCACAAGAGTTCTCATATTTGAAATAGCTGTGCTGTAGTTACCTATATTTTCAGTAAGTTTAATGTAGGGTGGACCACATGGACAGCCCCTTAGTGGTCAATGAAAATAAGGTCATTTTCTTCAGCCTCACTAGTGATCTGTCACAACATCACTCGTGAGTCTCCATATCCTCCTCTGTAGGTTTTTCTGTGTCCTACCAAACACACATCAGTTTTCTGACATGACAGTCTATGTGTGGAGTTCACTTCACTGACGGAAGAaagtggaaaatatgtatttttcttttatTCTTCTCATTTATGTTGCCGGTGTTGCGGTAAAAGAAAGTTGTGCAGATTTGGTTCCCACTCCCACTATTGTATTTTCCCCTGGGTACATCAATATagctacacctgctacagtacgaTGTGAGTCACCAAAAGGCACAGAGTGCAAATTCTACAAAGATCATGACCCCAACCCTATAAGGAAACTGGATTACAAGCAGGGTGCTTGCCAGTTCAAGTTGCTCTGGAATGAGTTCAAAAGGTGGAACAAGACTGAAGTAGATCTCAGCTGTGTAATTCTACAGAACAGAGAAGGTGAAACGATCAAAACCTCAAAACCTAGTGATGCTCGAAGACTTAATGTGGGTGATCCAATTGGAAAGCCCATTGTTCAGGTGTTGAAGATTGGGAATTACCTCAATCTTCGATGTGAGGCCAAGGCTGGCACCTCATGCTACTTTTATCTGAACAATGGTGACTCACACTTTAAAAAACGACCCTACAAAGACAATGTCTGTGTGGGGAGAGTGGCAGAAGAGGAACtgcagaggaagaggagcagtGCTGGAGAGATCTTCATCACCTGTGCTGTGGAGCTGGTGGTAGAGGGTGAAGATACTGTGACATCACAGCATAGTGAACCCCTCGGTATCACCATAGATGGAGCTACTAGTTCCCCATCAACGTTCAGTTTACCTGTTCAGAATGAGAAAAGCAACGATACCACAGCCCAAGGAAGAGGTCCAGGGTTCCTCGTCGTCATCAGTCTGGGTGCTGGTTCCCTTTTCCTGATTCTGCTAGCTGGGTCTGTGCTGTGTGTTCTCCAACGCAAGTGTGGGGTTCAAGGCAGGCCTGTAAATACTGGAAGCCCACCTGAACAGCAAGACCAAACCCCACCTTGTGTCTATTCTGTCATCACAAAGCCTTCTAGGGATGAGGAAGAGGACACTAGTCTGCAATACGCTACAGTGACATATACCGGTGACCAAGCTAGTCGTCAATATGCAACAGTGACATCTACCGGTAACCAAGTTGGACCTGGGCGCACCAAGATCAAGTTTGAAATAGCTGGAGAGTACGCCCTCTTAGCAGAATCATAGAAGAAGAAACATTTACTGGATAACATGTTTTGCCATAGTTCACAGTTACAATCCTATATTTTGTTTTCATATTGGATCATAATTTACTCATAGTACAAAAACAAATCCTGCCACAACATCAAAGACTAAAGATATCTACTCAACTATTTGCATTTTAggttaaatgaaataaatgaaaagTACACTGTCTGAaacataaaataaatattttcctTCATTGAGTTACCGAATCTAGTCAGCAGTCACCAATCAGTAGTCACCAATCTATTTCACTCCTTGACAAGAGTCAATATAGACTCAAAGCCACAAGAGGGTAGAACACATGTCAAACTTTGCTTGTtacatctctacatctctctctctacatcgctCTCTTTAACCATGTCTGGTGTATATTAgttttcagtggtggaaaaagtactcaacaaacatacttaagtaaaagtaaagataccttcatagaaaatgactcaagtaatagtaaaagtcacccagtaaaattctacttgtgTAAAAGTCTATAAGTATTTGATttaaaatatacttcagtatcaaaagtgaATGTATAactcatttcaaattccttatctTAAGCAAACCAGAATGCACCATTTTCTTTTTATTCTTCTTTTTTGCAGAaggccaggggcacactccatcactcagccATCAGTTACAAACAAATCATGTcagtttagtgagtctgccagatcagaggcagtagggatgacaagggatgttcggctg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106566474

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977197.1 False 2275 mRNA 0.41 10 28257967 28261576
XM_036977198.1 True 2258 mRNA 0.41 10 28257969 28261576

Neighbor

gene id symbol gene type direction distance location
LOC110523538 NA coding upstream 16297 28239115 ~ 28241670 (+)
ftsj1 LOC106566467 coding upstream 22467 28228013 ~ 28235500 (+)
LOC110523534 LOC106566461 coding upstream 145188 28109822 ~ 28112779 (+)
LOC110523531 LOC106566436 coding upstream 189994 28052621 ~ 28067973 (+)
si:ch211-222n4.2 LOC106566406 coding upstream 241915 28008073 ~ 28016052 (+)
LOC118964581 NA coding downstream 201 28261777 ~ 28264335 (+)
ank1b LOC106566514 coding downstream 8261 28269837 ~ 28346918 (+)
LOC118964582 NA coding downstream 36147 28297723 ~ 28303108 (+)
rnf180 LOC106566588 coding downstream 145148 28406724 ~ 28416408 (+)
rgs7bpb LOC106566593 coding downstream 156646 28418222 ~ 28423947 (+)
G385733 NA non-coding upstream 1143 28253864 ~ 28256824 (+)
G385730 NA non-coding upstream 6632 28251023 ~ 28251335 (+)
G385726 NA non-coding upstream 12424 28245238 ~ 28245543 (+)
G385715 NA non-coding upstream 39739 28217811 ~ 28218228 (+)
G385714 NA non-coding upstream 42230 28215480 ~ 28215737 (+)
G385809 NA non-coding downstream 13381 28274957 ~ 28275246 (+)
G385812 NA non-coding downstream 15645 28277221 ~ 28277456 (+)
G385816 NA non-coding downstream 20785 28282361 ~ 28282569 (+)
G385817 NA non-coding downstream 22262 28283838 ~ 28284055 (+)
G385819 NA non-coding downstream 30505 28292081 ~ 28292281 (+)
G385171 LOC106566130 other upstream 353236 27904467 ~ 27904731 (+)
G385053 NA other upstream 550889 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 574574 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1594354 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1797271 26437517 ~ 26502284 (+)
G385805 NA other downstream 155029 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 664701 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1480224 29741800 ~ 29763439 (+)
G387516 NA other downstream 1635410 29896986 ~ 29898134 (+)
G388019 NA other downstream 2025375 30286951 ~ 30287824 (+)

Expression


Co-expression Network