LOC118964581


Basic Information

Item Value
gene id LOC118964581
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28261777 ~ 28264335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051706.1
tgttacttaagtactttacaccactgttactttaaaaaatatgttttgttaatatcacagtttacttacagTATGTGACTTTACTTCCACCTGTTGATACACTACCTCCATATTtcctctctctgcttcctgatTTTCTGCTACCCTGTAAACCCCACCTCTTCCTGTAGTATGTCAACATCTGTTCCTCTCAGACCAATTGTAAACCCACATAATAATAGCAATAATTCAATAATATTTTAAATACACTTTTTGCAATTACAAGCAGTTCCTGCCAGTTAGGCCTGTATAAGCCCAACCTAATCTGGAATACCCAGAACAAAATATTGCATGAACATAACTCTCATAACCTCTGTGCTCCCGACAGACGTAACATGTTCGTTACAGATCTTAGGACAGATATGCCCACCCAGATCAGTCTTATCTACCCCTGCAATTGGAGCACATTACAAACCTATGACAGCTATAGGTATGATAGTGTATATGAAAATGATGCATCATCACAGAAGGGTCATAGGTGGGAGCTATTGTTTCACCataaaaggagagaggggagacacaaaATACAGTGTgtcactctcacactcactacTGTGGCATTGCCTGAGTCATTATCTACAACCAACAGCTCCTGTgtatatttctaaaaacattttccaGAGCATGTGAAGATAGTCGCCCCCGAAAGCATTTCTCATTTCCATATATCCTGTTTcacttctctctctgtattatacATAATAACAGGTGGCAGGTTTAAAGAACTCTTAATTATGATCCAATGAATGTGCTGCTGGTGCCTTATGTTTGTACTTTTGGTTGGAATAACAATGAACGACATTTCTTGTAGTCTCTCTTGAACTACAGTTAACAGATGCAGGGGACaaggagaaacagacaaacactTGGATTACCCAGAAGAAGCACCAGATCTCAGTAAGCCTGAAGTTTGTGACCCTGACCGAAGTGGTTGAGCTGAGCAGTGAGTCCTCTGCCCTTGTAGAGGGTCAGCAGTGTTTGTTCTATGTGGATTCTAAACTCAAGGAGCTTGGTCGATCAAATGCCAGCCACAACCAATGCTCCCTCCGAGTAAAGGGGTCAGAGCTGCCTGGGTGGAAGCCCagagggctgtggtcaaaagtcaCCGTCCAGTGTCGTtatgaagaggagaagaagaaaaggcAATAATACCATGACATAATTATGTTTTTATGTAGCTGCCTCACACTTTTCCTCCACTTTGCCACCATAGTGCTTTTTTGGTTTTCTGTGCATAAACAGTACAGTGGGCTGGCACACCACATATAAGCATGTTATAAATGTTATAAATTAATAACAGTTGGAATTGTGGTTTATTGAAAGGATTTGATGTTTtgatgttttcttttaaatagtGATTTGTCCTCATCCCTTTGTTACAATAACAGGAAGGTGAAGATGATTTGTGCTATGCCACCGTGTCCCATGCTGGTGCTCCTCCATCCTACTCAGTCAAGTTTGAACAAGGCCATGACTATGCCACAGTGGTCATATACTGACCAGCATTGCTGAACTGAATGGACATGAAAGGACTTCCACATGGATAGATTGCTTGACTTTAACACCTACATTTCAATTTTCTTTCCAAGAAATCAATTGCATAAATCTATTTGCAATGTAGTTTTGATTATCCAATTTGTCACAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106566156

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051706.1 True 1684 mRNA 0.40 3 28261777 28264335

Neighbor

gene id symbol gene type direction distance location
LOC110518653 LOC106566474 coding upstream 201 28257967 ~ 28261576 (+)
LOC110523538 NA coding upstream 20107 28239115 ~ 28241670 (+)
ftsj1 LOC106566467 coding upstream 26277 28228013 ~ 28235500 (+)
LOC110523534 LOC106566461 coding upstream 148998 28109822 ~ 28112779 (+)
LOC110523531 LOC106566436 coding upstream 193804 28052621 ~ 28067973 (+)
ank1b LOC106566514 coding downstream 5502 28269837 ~ 28346918 (+)
LOC118964582 NA coding downstream 33388 28297723 ~ 28303108 (+)
rnf180 LOC106566588 coding downstream 142389 28406724 ~ 28416408 (+)
rgs7bpb LOC106566593 coding downstream 153887 28418222 ~ 28423947 (+)
ghr1 ghr1 coding downstream 174743 28439078 ~ 28463949 (+)
G385733 NA non-coding upstream 4953 28253864 ~ 28256824 (+)
G385730 NA non-coding upstream 10442 28251023 ~ 28251335 (+)
G385726 NA non-coding upstream 16234 28245238 ~ 28245543 (+)
G385715 NA non-coding upstream 43549 28217811 ~ 28218228 (+)
G385714 NA non-coding upstream 46040 28215480 ~ 28215737 (+)
G385809 NA non-coding downstream 10622 28274957 ~ 28275246 (+)
G385812 NA non-coding downstream 12886 28277221 ~ 28277456 (+)
G385816 NA non-coding downstream 18026 28282361 ~ 28282569 (+)
G385817 NA non-coding downstream 19503 28283838 ~ 28284055 (+)
G385819 NA non-coding downstream 27746 28292081 ~ 28292281 (+)
G385171 LOC106566130 other upstream 357046 27904467 ~ 27904731 (+)
G385053 NA other upstream 554699 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 578384 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1598164 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1801081 26437517 ~ 26502284 (+)
G385805 NA other downstream 152270 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 661942 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1477465 29741800 ~ 29763439 (+)
G387516 NA other downstream 1632651 29896986 ~ 29898134 (+)
G388019 NA other downstream 2022616 30286951 ~ 30287824 (+)

Expression


Co-expression Network