LOC118964582


Basic Information

Item Value
gene id LOC118964582
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28297723 ~ 28303108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051707.1
TAGTGTTGTAACAGTGATCAGGTTGAGACAGTACCTGGCTTTGGCCCCGGACTGAGGTCACCTGCACATGAACAGATGATGAATCTACAGTCACATAGAGCAGAGGTTTATGGAGAGATGAGGACCTCACACCTCTCAAAAGAGGAGTGTGACAGAATCGTCTGGGGGGAGACGGCGCAGAACAGCTGCAGACgtgagtatgtgtgagtgtgtgtcagtgtgtatgaaGGGAATAGACTcagtaggacaggagagagaaaggagggctCATATGTTACCATGACCTCTTCATTATTGATGGCATGTCAGGCAAAGTCCTGTTACCGCCCCCCTCACCAGCTCAAACTGTCAGAAATAAGTGAGTGGAGTTATTCCCACTCCCAATGATGGAAAAGAAACCTTATGTAAAAATTGGCCCTGGCTGTCCTCTAGTTTGTTTCAGAGAGACAAGCCATGATAGTAATGTATTTAAGGATATACCTTGCCCTTGCCTTGTGTCCTCTGACACAGCAAAATatcctctctttgtccctctctattgctttcctttcccctctctctcttatgtTCCTCTCCTTTAGTTTCCTTCTCTGTCATCAGCACTTTCacttgacccctctctctctctccctttatcccaCATTTCCAACTGTTTAGCTCCCCCCTCTCCTTATCTTGTCTATTTACctcccctcccactccctcttGCTAGCTCTGCTTCTTCCGTCTATAAGAATATTtagaagataaatacacaacgcaaAGACAGAGGACGAGAGGACAATAGAGTACtaacgatcaatggaaatagtgttttttctgtaatagggaTATATTGATCAATGGGTCAGAGACGTGAGGAATTTGTCTAGGCATCGAGCCTGAATTAGGATACTTCTTATTTGGCTTTTGGTCCtgttttattgcaaggaattctaattggtcaaccacaggctagggctgggttataaaCGACATCCTGTCCCTATGTTCTGTGGAtagaatcacaggagagaatcactgaggggagaatcactgaggacagagAAGGAACGGCCATCTACCTCTCAACATAACATCTATGATTTATCCTCTctgaataaacctattttcctccacctgatttgctttggggtctgtgttattatAGAATAACTTCAACTTCTAACatttggtgccgtgacccggatgaATTGGTctgaacaacaacaagaaaaaacttatcaactgtgtgttgctcctgaagaaagagagaaggctgAGCGCAACCCACTTTGGGGAGTCAACTCTGCTGATTGATGGCATAATTGCTGGGTTATGAGAATCTACAGTCTGAAGCTGAAGCAATATCCCTATAACCAAGGACTCTACCTGAAATGATACAAGATCACCGGTGAAGTGTTCATTAGAAAAGTCCTTAACCCGTGGAACGGAAGAAGAATTCCTCACTACCGGCAGACTGCCAGAACATCATTTCTAATAGTTATcaatgtgggactgataccagtgtggaagagctggtcacttTTAAAGGACTTGGTGAATGATTACCTTGCCAATAGGATGATTGAATATTATTTTCTTGTAGAcaattttttgtgtgtgtttgagtttcCTCCTAATACAGGATGTGGTGCGATTCATCATTACACCTGTTAATACTTATTTTCTATAACTTTGTTTTAAATCTATTTCTTATTGGAACAGCAAGTACAATATGCCCTTTGTGTTTTATAGAAATGCAAGGTGTTTTAATGTTAGTGATTTTATGCTTACAGCTAATGTTTTTTATACTGtctattttttctatgttttctaaaaaatacatttttaagtaTATTTATTTCTAAAATGGTCTAGAGGGGAGTATAAGAATATTTAGAAGATAAATGCACAACGCAGAGACAGAGGATAATCAATGGAACAAAGAAATAGTGTATTTTCTGTAAAAGGGAATTATTGATcaatgggtcagagacatgggaggaatttgTCTAGACATCGAGCCTGAAATAGGATAcgtgttatttggccattggccctgttttattgcaaggaattctaattggtcaaccacaggctagggctgggttataaaCTACATCCTGTCCCTACGTTCTGTGGAtagaatcacaggagagaatcactgaggggagaatcactgaggacagagAAGGAACGGCCATCTACCTCTCAACATAACATCTATGATTTAtcctctttgaataaacctatttttcttCCCCTGA
>TU438218
ATTATTTTCTTGTAGAcaattttttgtgtgtgtttgagtttcCTCCTAATACAGGATGTGGTGCGATTCATCATTACACCTGTTAATACTTATTTTCTATAACTTTGTTTTAAATCTATTTCTTATTGGAACAGCAAGTACAATATGCCCTTTGTGTTTTATAGAAATGCAAGGTGTTTTAATGTTAGTGATTTTATGCTTACAGCTAATGTTTTTTATACTGtctattttttctatgttttctaaaaaatacatttttaagtaTATTTATTTCTAAAATGGTCTAGAGGGGAGTATAAGAATATTTAGAAGATAAATGCACAACGCAGAGACAGAGGATAATCAATGGAACAAAGAAATAGTGTATTTTCTGTAAAAGGGAATTATTGATcaatgggtcagagacatgggaggaatttgTCTAGACATCGAGCCTGAAATAGGATAcgtgttatttggccattggccctgttttattgcaaggaattctaattggtcaaccacaggctagggctgggttataaaCTACATCCTGTCCCTACGTTCTGTGGAtagaatcacaggagagaatcactgaggggagaatcactgaggacagagAAGGAACGGCCATCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051707.1 False 2249 mRNA 0.41 2 28297723 28303108
TU438218 True 617 lncRNA 0.35 1 28302433 28303049

Neighbor

gene id symbol gene type direction distance location
LOC118964581 NA coding upstream 33388 28261777 ~ 28264335 (+)
LOC110518653 LOC106566474 coding upstream 36147 28257967 ~ 28261576 (+)
LOC110523538 NA coding upstream 56053 28239115 ~ 28241670 (+)
ftsj1 LOC106566467 coding upstream 62223 28228013 ~ 28235500 (+)
LOC110523534 LOC106566461 coding upstream 184944 28109822 ~ 28112779 (+)
rnf180 LOC106566588 coding downstream 103616 28406724 ~ 28416408 (+)
rgs7bpb LOC106566593 coding downstream 115114 28418222 ~ 28423947 (+)
ghr1 ghr1 coding downstream 135970 28439078 ~ 28463949 (+)
LOC110523547 ccdc152 coding downstream 160991 28464099 ~ 28467134 (+)
LOC110522905 LOC106563371 coding downstream 170439 28473547 ~ 28475595 (+)
G385819 NA non-coding upstream 5442 28292081 ~ 28292281 (+)
G385817 NA non-coding upstream 13668 28283838 ~ 28284055 (+)
G385816 NA non-coding upstream 15154 28282361 ~ 28282569 (+)
G385812 NA non-coding upstream 20267 28277221 ~ 28277456 (+)
G385809 NA non-coding upstream 22477 28274957 ~ 28275246 (+)
G385831 NA non-coding downstream 12044 28315152 ~ 28315429 (+)
G385832 NA non-coding downstream 12627 28315735 ~ 28315958 (+)
G385837 NA non-coding downstream 31294 28334402 ~ 28334852 (+)
G385843 NA non-coding downstream 56270 28359378 ~ 28360037 (+)
G385845 NA non-coding downstream 61975 28365083 ~ 28366503 (+)
G385171 LOC106566130 other upstream 392992 27904467 ~ 27904731 (+)
G385053 NA other upstream 590645 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 614330 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1634110 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1837027 26437517 ~ 26502284 (+)
G385805 NA other downstream 113497 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 623169 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1438692 29741800 ~ 29763439 (+)
G387516 NA other downstream 1593878 29896986 ~ 29898134 (+)
G388019 NA other downstream 1983843 30286951 ~ 30287824 (+)

Expression


Co-expression Network