rnf180 (LOC106566588)


Basic Information

Item Value
gene id rnf180
gene name LOC106566588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28406724 ~ 28416408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602334.2
GTGAAGTTTGGTGCATCTGACGCTCCGTAACAAAAAGCAGTGACGTCATTGTCCTCTAACTTTCGGACAAATTTTTCTTCTATTAAATTGTTAATTAATCGTTTCGAAGGGAACGCATAGGAATTTGGAAATCCCAGATGAGAACAGCAGAAATTGGTTTCTATGGACAACCCAGGGGCGGTGGCTATGCTCCGCTGCAGGAAGTGTCGTAAAGGCTTTGTAGACACAACATGCCTGCATCCGATAGTGCCTGATGATGACACAACGGCAGCAGGTACATGCAGCGTCTGGCACATGAACGTTGATACACTGCCAGAGTGGATACTGACGTCAGTTCACCAGGCCCAGTGGACAGTGGGGAAGCTGAACTGTGAGAACTGTGGTGCTCGCCTGGGTGGCTTCAACTTTCTCAACAACACCAAATGCCCATGTGGTCAGGAGTCCACCGTGCACCTTAGCAAGAGTCGGGTTGACCAGGACCACAAACGCTACCTTCATGTGGTCAGACCGCAGACGACGAGAGGTAGGGGAGGACCGGGCTGCCTGAAGGGCGAGCCGGTGGGTTCTCACAGTGAGCAGTACAGGTCAGAGGTCGGGGAGGACTTTCTTGTTGGCTCACAGCTCTGCTGTACTTCTGTGTCCCGCCTTAACGCTGAGAGCCGACCAACCACAACACACCCAGATGCCTTTTTCCAGTTGGCTGACATCAGAGCCACCCAATCAGTTCCATTGAGCTCCCCCAGCATTGTTTCTCATACAAAGTTTGGTGCGAGGGGCAGGTTGGAACCCTCCTGTAGCTCTGGCTCCCAGACTGGCCCTGTTGAAGTGACTGAGGGAGAGGTGAGGACTGGGACAGAGCAGCTGCCCTATTCACCTGTTGTGTCCTACACCCCTCATCTATTTGCAACTAGTATTATTAGGTCACCTACCTGCCTATCACGTCTGACTAGAGAGTCCCCTGGTTCTCGTCTTCTCTCCCTGAGAGGGCCAGGTGTCTCCCACATCCCTGGAGAGCAGGAGgaggccgtggaggaggagagaagaggaacccCCACAGAGCTCCAGGCCCAGCTAGTAGCCAACAATGCTTCTCCAGCCCTACAAAGGTTCAGCAAGAAAGAGAAGAACCGGCTGAAGAGCCAGAGGAGgaaacagaggaagaaagagcgCTGGCTCCACTCCCAGGAACAGAGTGTGACAGGGCTGCTAACAGACAGTgaggaggtggacagagaggactaCACCTGTGCTGTGTGCCTGGATgtctacttcagtccctatagCTGTCACCCCTGTGGCCACATCTTCTGTGAGCCCTGCCTCCGCACGCTGGCCAAGAACCGGCCAGCCAACACCCCCTGTCCCCTCTGCCGCACCCtcatctcacacacactcttccagAAAGAGCTCAACCAAACAGCTAAGACTTTTTTCCCGAAGGTCTACCACTCACGGAAACACAACTTTCAAAAAGCCAACTATGCTAAATTGCCTCTTCCCAACTGCCCAAAACGTTTCCGCATCTTTTGGGGGTACCAGGGGCAGGTGGCTCCAGGGAGGTGGTGGCACTTTGCCCCAGCAGGCTTCGCCCTGGATGCCCTGGACCTGGCCGACATGCGCGGCTGGTTCTTCGATATTGACCTGGTCATCATCTACATCCACTCTGTCAACTGGATACTGGCCCTGCTGGTTCTTTGCTTTCTGGCATACTTCTTCTTGTCTTGAGTGCTGTTTGTGTATTTAGCCAGTGATGGCTGACCTCTAAAAATGGTACAGCTGAGGTTTCTGGGTGATGTAGTATTGTGCCTAATGGTGCTTACTGCCAGGAAATTCACCTGTCACCTCCATATGTTAACTTGAATCATGAGCAGTCCTGAGGGGAACTGGAACTGTgaggtgttttttttgttgcagttGGGGAGGTCATATATATAGAAATACCAGTACTCAAATGAAGTTGTGTAGATGGGCTTATTTCATATTTTGTGAGAGTTTTACATACAATCTTTTCACTGTAAATCCAAAATTGTTTTATGAGGGATAGAAGTGTAATAGAAGTGAAAACGAAAGACCAATAATtattgttgtttaaaaaaaaacaggttaGGAAATGCACAGAGATCTCTAATAATAGCCCTATTTTGATAGATGTATGACCAGTGGGCCCGCTCTGTCAAGGACTTCCCTCAGGTCATCAACATGAAGGTAGCAtaatcacatacagtaccagtcaaaagtttggacacacttactcattccagggtttttctttattttgactatattctacattgtagaataatagtgaaggcgtCAACTAGGAAataacatgtggaatcatgtagaaagcaaaaa

Function

NR:

description
E3 ubiquitin-protein ligase RNF180-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602334.2 True 2355 mRNA 0.49 7 28406724 28416408

Neighbor

gene id symbol gene type direction distance location
ank1b LOC106566514 coding upstream 59806 28269837 ~ 28346918 (+)
LOC118964582 NA coding upstream 103616 28297723 ~ 28303108 (+)
LOC118964581 NA coding upstream 142389 28261777 ~ 28264335 (+)
LOC110518653 LOC106566474 coding upstream 145148 28257967 ~ 28261576 (+)
LOC110523538 NA coding upstream 165054 28239115 ~ 28241670 (+)
rgs7bpb LOC106566593 coding downstream 1814 28418222 ~ 28423947 (+)
ghr1 ghr1 coding downstream 22670 28439078 ~ 28463949 (+)
LOC110523547 ccdc152 coding downstream 47691 28464099 ~ 28467134 (+)
LOC110522905 LOC106563371 coding downstream 57139 28473547 ~ 28475595 (+)
LOC110523549 LOC106567216 coding downstream 65024 28481432 ~ 28483385 (+)
G385868 NA non-coding upstream 9978 28396537 ~ 28396746 (+)
G385864 NA non-coding upstream 17791 28388727 ~ 28388933 (+)
G385857 NA non-coding upstream 24835 28381657 ~ 28381889 (+)
G385856 NA non-coding upstream 25744 28380757 ~ 28380980 (+)
G385848 NA non-coding upstream 38830 28366757 ~ 28367894 (+)
G385884 NA non-coding downstream 7895 28424303 ~ 28424517 (+)
G385886 NA non-coding downstream 8112 28424520 ~ 28424894 (+)
G385885 NA non-coding downstream 14273 28430681 ~ 28432375 (+)
G385891 NA non-coding downstream 55661 28472069 ~ 28472287 (+)
G385171 LOC106566130 other upstream 501993 27904467 ~ 27904731 (+)
G385053 NA other upstream 699646 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 723331 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1743111 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1946028 26437517 ~ 26502284 (+)
G385805 NA other downstream 197 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 509869 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1325392 29741800 ~ 29763439 (+)
G387516 NA other downstream 1480578 29896986 ~ 29898134 (+)
G388019 NA other downstream 1870543 30286951 ~ 30287824 (+)

Expression


Co-expression Network