LOC110523547 (ccdc152)


Basic Information

Item Value
gene id LOC110523547
gene name ccdc152
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28464099 ~ 28467134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976519.1
GTGCAGACAAGAGTTCCCGCTGTAGTTTAAAATAGACGTTTAAACTGTTGTGATGTATATGGTATACACCtgccaggtagctagctagcttagcatATTGAAGAATAAAACACTGAACCTAGAGATGAAGAAATGTACAGTAGTAAATCTGGACAAGTTTATTGATGATTTCACTCATCTGGAACAGAAAATTACAGAGCTCAAGGGTAAAAACAACATATTGGAGATCAAGTTGGATGAGACCAACAGAGTTCTGAAAATTTCTCAGACCAAAGAGAAGTGCTTGATTGAGGAGCGAGATGGGATGTTGGGGACAGTGAAGGGACTCCAGCAGACTCTACTGCAGCAGTGTGACCTCAGAGTGGAGAATGAAAAGTTGAAAAGCACTGTGTCAGACCTAAAAAGGCAGAGTGATATGACAGTAGAGgagcGGGAAGCTGAGATTCAGAGGCTGGTGGCAGAGATGAGAGCTGTGGGAGAGAGATATCAGAAGGAGTTGGAATCTCTGAGAGACCAGTgcaggagaggggtggaggacactcacagagaaacacagagcaaACTTGAGGCGAAAGATGCAGAACTGAAAGAGGCCCTGGAGAGGAAGGAGTCAGATATGgcagagatgagaaggagaatgagggaccaggagagagagaggcaaagtgAAATATTAAAGTTACAAATGGAGTTTGGTGCTAAGCTTGCCAGGGTGCAGAGTACCACACAGAGGATCCAGCAGCAGCCCCAGGGCTCAGGTCTTTTACCTCAGAACATCTTCAAACGGAAGTTCCAGTTCCTTcaggaggagaagaacagagaggtcGAGGCCCTGCGCCAGAGAATCAAGGAATTGGAGAAGCAGCACGCCAGCGGATTCAGTGACTCCCGTCTAAAGAGAAAGAAGATTTAGCATATTTAAAATATGCAGGAGTGAAATTCATCTACAGTTGTGCCTTTGTATTCTTTTTGGTATAGTGTTCCTGGTGTTTGCTCTCAAACAGTAGTTGGGTCATTCTACGAAATGAGTGCTTTTTCATTGTTTAAATacaaattgtgcaccaatattgaattttaaaagcctgttatgtTAATTGatgtgccctttaatatagaccacatggagaattcaataaatcagattttATTTATATGAGT
>XM_021602337.2
ACGTTTAAACTGTTGTGATGTATATGGTATACACCtgccaggtagctagctagcttagcatATTGAAGAATAAAACACTGAACCTAGAGATGAAGAAATGTACAGTAGTAAATCTGGACAAGTTTATTGATGATTTCACTCATCTGGAACAGGTAACTTTAACATAAAGTAGGAGGACAGCTAGTTCTTCAGGTAGGTAAGTTAACGTTAGCCcgctagctagccagtaactaatctagctagctagctaaataacttAAAATAGCCTATGAGCAGGCTATGCTGAATTTGCCTTAAATTAATCCTGTCATGAAAGTGGCAGTAACAACAGTTCCACCACTGCCTGAGGATTTCAATAAAATTACAGAGCTCAAGGGTAAAAACAACATATTGGAGATCAAGTTGGATGAGACCAACAGAGTTCTGAAAATTTCTCAGACCAAAGAGAAGTGCTTGATTGAGGAGCGAGATGGGATGTTGGGGACAGTGAAGGGACTCCAGCAGACTCTACTGCAGCAGTGTGACCTCAGAGTGGAGAATGAAAAGTTGAAAAGCACTGTGTCAGACCTAAAAAGGCAGAGTGATATGACAGTAGAGgagcGGGAAGCTGAGATTCAGAGGCTGGTGGCAGAGATGAGAGCTGTGGGAGAGAGATATCAGAAGGAGTTGGAATCTCTGAGAGACCAGTgcaggagaggggtggaggacactcacagagaaacacagagcaaACTTGAGGCGAAAGATGCAGAACTGAAAGAGGCCCTGGAGAGGAAGGAGTCAGATATGgcagagatgagaaggagaatgagggaccaggagagagagaggcaaagtgAAATATTAAAGTTACAAATGGAGTTTGGTGCTAAGCTTGCCAGGGTGCAGAGTACCACACAGAGGATCCAGCAGCAGCCCCAGGGCTCAGGTCTTTTACCTCAGAACATCTTCAAACGGAAGTTCCAGTTCCTTcaggaggagaagaacagagaggtcGAGGCCCTGCGCCAGAGAATCAAGGAATTGGAGAAGCAGCACGCCAGCGGATTCAGTGACTCCCGTCTAAAGAGAAAGAAGATTTAGCATATTTAAAATATGCAGGAGTGAAATTCATCTACAGTTGTGCCTTTGTATTCTTTTTGGTATAGTGTTCCTGGTGTTTGCTCTCAAACAGTAGTTGGGTCATTCTACGAAATGAGTGCTTTTTCATTGTTTAAATacaaattgtgcaccaatattgaattttaaaagcctgttatgtTAATTGatgtgccctttaatatagaccacatggagaattcaataaatcagattttATTTATATGAGT
>XM_036976520.1
CGTTTAAACTGTTGTGATGTATATGGTATACACCtgccaggtagctagctagcttagcatATTGAAGAATAAAACACTGAACCTAGAGATGAAGAAATGTACAGTAGTAAATCTGGACAAGTTTATTGATGATTTCACTCATCTGGAACAGAGCGAGATGGGATGTTGGGGACAGTGAAGGGACTCCAGCAGACTCTACTGCAGCAGTGTGACCTCAGAGTGGAGAATGAAAAGTTGAAAAGCACTGTGTCAGACCTAAAAAGGCAGAGTGATATGACAGTAGAGgagcGGGAAGCTGAGATTCAGAGGCTGGTGGCAGAGATGAGAGCTGTGGGAGAGAGATATCAGAAGGAGTTGGAATCTCTGAGAGACCAGTgcaggagaggggtggaggacactcacagagaaacacagagcaaACTTGAGGCGAAAGATGCAGAACTGAAAGAGGCCCTGGAGAGGAAGGAGTCAGATATGgcagagatgagaaggagaatgagggaccaggagagagagaggcaaagtgAAATATTAAAGTTACAAATGGAGTTTGGTGCTAAGCTTGCCAGGGTGCAGAGTACCACACAGAGGATCCAGCAGCAGCCCCAGGGCTCAGGTCTTTTACCTCAGAACATCTTCAAACGGAAGTTCCAGTTCCTTcaggaggagaagaacagagaggtcGAGGCCCTGCGCCAGAGAATCAAGGAATTGGAGAAGCAGCACGCCAGCGGATTCAGTGACTCCCGTCTAAAGAGAAAGAAGATTTAGCATATTTAAAATATGCAGGAGTGAAATTCATCTACAGTTGTGCCTTTGTATTCTTTTTGGTATAGTGTTCCTGGTGTTTGCTCTCAAACAGTAGTTGGGTCATTCTACGAAATGAGTGCTTTTTCATTGTTTAAATacaaattgtgcaccaatattgaattttaaaagcctgttatgtTAATTGatgtgccctttaatatagaccacatggagaattcaataaatcagattttATTTATATGAGT

Function

symbol description
ccdc152 Orthologous to human CCDC152 (coiled-coil domain containing 152).

NR:

description
coiled-coil domain-containing protein 152

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976519.1 False 1158 mRNA 0.43 8 28464099 28467134
XM_021602337.2 False 1328 mRNA 0.43 8 28464134 28467134
XM_036976520.1 True 1016 mRNA 0.44 7 28464135 28467134

Neighbor

gene id symbol gene type direction distance location
ghr1 ghr1 coding upstream 150 28439078 ~ 28463949 (+)
rgs7bpb LOC106566593 coding upstream 40152 28418222 ~ 28423947 (+)
rnf180 LOC106566588 coding upstream 47691 28406724 ~ 28416408 (+)
ank1b LOC106566514 coding upstream 117181 28269837 ~ 28346918 (+)
LOC118964582 NA coding upstream 160991 28297723 ~ 28303108 (+)
LOC110522905 LOC106563371 coding downstream 6413 28473547 ~ 28475595 (+)
LOC110523549 LOC106567216 coding downstream 14298 28481432 ~ 28483385 (+)
pip5k1ba LOC106566653 coding downstream 253143 28720277 ~ 28733042 (+)
LOC110523554 LOC106566671 coding downstream 270327 28737461 ~ 28780731 (+)
LOC110523556 LOC106566689 coding downstream 329314 28796448 ~ 28804711 (+)
G385885 NA non-coding upstream 31724 28430681 ~ 28432375 (+)
G385886 NA non-coding upstream 39205 28424520 ~ 28424894 (+)
G385884 NA non-coding upstream 39582 28424303 ~ 28424517 (+)
G385868 NA non-coding upstream 67353 28396537 ~ 28396746 (+)
G385864 NA non-coding upstream 75166 28388727 ~ 28388933 (+)
G385891 NA non-coding downstream 4935 28472069 ~ 28472287 (+)
G385933 NA non-coding downstream 69205 28536339 ~ 28539057 (+)
G385946 NA non-coding downstream 93113 28560247 ~ 28560612 (+)
G385973 NA non-coding downstream 191438 28658572 ~ 28658860 (+)
G385805 NA other upstream 46544 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 559368 27904467 ~ 27904731 (+)
G385053 NA other upstream 757021 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 780706 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1800486 26661838 ~ 26663613 (+)
spag8 LOC106566715 other downstream 459143 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1274666 29741800 ~ 29763439 (+)
G387516 NA other downstream 1429852 29896986 ~ 29898134 (+)
G388019 NA other downstream 1819817 30286951 ~ 30287824 (+)
G390184 NA other downstream 3493221 31960355 ~ 31960745 (+)

Expression


Co-expression Network