LOC110523556 (LOC106566689)


Basic Information

Item Value
gene id LOC110523556
gene name LOC106566689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28796448 ~ 28804711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602354.2
tccttccctccctctctctctcctcctcacagcACTGCTGTCTGGACAGAGTCTTCTTATCTGAGACTGTACAGTGTGCTGGCAGTTTGTGAGCTTGAGATATTGATATTGattgacagacacagacacagacacacaggaccaGACAGAGAAATACTGACAGTGTGGACCTCGAGCTGGCTTTGATTTTGGTTGGGACACACAATCGCTCGTGCATTAGTTTGAAGGTACTTCCGCTTGTCTCCtgtttttggattttttttaaaatttaagaCTGCAATGCTTCCATTCTACCTCTTCACCCTGTTTGCCACAGTCCAAGCCCAGATCCAGCATTTGCCAGGCTCCTGTAGCTTTGAGTCCAGCACCTGTGGATACACGTCAGACCCAAACTTTTTAAGCTGGACGCTCAACAAAGATGGGTCTTTCATCTCAGTGGACCCAGGCCTAGAGGACCAGGATGGGCAGGATGAGAGgtcggagggagaggagaggtcagagGGGGAGGGCAGGGCAGTTCTGCTGGGCCCATCCATGGAGCAGGAGGACTGGAGCTGTCTGAGGCTGGTGTACCAACTTTCCGGGTCGGGCTTTCTACAGGTCCAACAGCGCAGAGAGGGCGAGAGCTTCGACCGGGCCCTGTGGAGCACCCAGACGGCCTCCGACAGCTGGCTCATCTCCAGCATTGACCTCCAGAACAGCACCGAGCCGTACAGGATTGCCATTGACGGCAGACCTGGTGAGAGCAAAGGTAGTAGTGTGGCCATCTTTGAGATACGCATCAACCCTGGATACTGCTTAGAGTGTGACTACGAGGAGTCGCACCTTTGTGGCTACAGAAACCAGTGGAACACCAATGTCAACTggtacaggggaggaggagctgCCCGGGACACTCAGAGCAACATACCTTACGTCCACACGCACAACGGAGCAGGTCACTACATGTATGTGGATTCTGTGCACGCCAAGACATTCCAGGAGGTAGCCAAACTGGTGTCCGCTATGACAACGGTGCCCATGTCGGGCTGCCTAAGCTTCCAGTACCAGCGGGGTGAGGAGCGAGGGAACCTGTTCTCTGTCTACACCAGGGACCAGGCAGGCCAGTACCAGGAGCTGTGGAGAGCAGACCCAGAGGACCAGAGCCTTAATGACTGGACTGCTACCACCTTGGAGTGGATACCTGTGCAGGTGGACATCAAGGCCCCTTTCCCTCTGCAGGTGGTGTTTGAAGTCACCTTCAACAGCCCCAGAGGGGGTCACGTGGCACTCGATGATATCGCCTTCTCTCCTGAGTTCTGTAGTGCAGAGACAGAGCCAACATTTGATCCCTCCATCGCCAACTGTGACTTTGAGGTGGGTTTCTGCCACTACACCCAGGATCAGATGGAAAGATCCCCATGGAAGAGAGTGTCAGTCAAGCCCAACATCTACAGGACTGGGGACCACACAACAGGGGCAGGGTCCTTTCTTCTAGCTCACTCTCGGCTGAGTCCACGTGCTGGCTATATTAGCCGCCTGCTCGGGCCTCCTCTGCCCGGCAACATGAAGTACTGTCTGAGGTTCCACTACTCTCTCCGTGGATTCCTACAGACAGACCAGGCGCTCACCGTTTACCTTCAGGGTCAGAGTGGAATCATACAGGACAGGATATGGACCCAGAACGACAAGTCCAGAGGTGTCTGGATAGCAACGGACATCACCTTCCAGAGTCCACAGGCTGCAAagGTGGTGTTTGTCAGCACATGTACAAACTTCTGGGACTGTGGTTCAGTTGCTCTGGATGACATCAGTGTGAGCCTCGGGGACTGTGATCTTACAGCAGGTTTACTCCTGTCTGTCCCTGGGCATTGTAACTTTGAGATGGGTCACTGTGGGTATATTCAAGACAAGGAGGATGATAAGGGTGACTGGGTACTGGTGAGAGGACCTACCCCTACCTCCTACACCGGGCCGAAGGGGGATCACACCACAGGAGTCGGGTACTACATGCACATTGAGGCATCTAACATGCTGCCTGGTCAGAATGCCCGGTTACTCTCCAGTCCTCTGAGGGGGTCCAGTGGTCCTCAGTGCCTACGTTTCTTCTACCAGATGTACGGCTCAGGCACAGGTGAGCTTAGCATCCATCTGAGACAGGATGGAAAGGATGTGTTGCTATGGAAACACACTGGAGAGCAGAGCATCACCTGGCTGAAAGCAACTGTGGAATACCAGAGTGACCAACAGCATCAGGTTGTTTTTGAGGCCATCAGGGGTTCCTCAATAAGGAGTGACATAGCCATCGATGACATTGTGTTTGAAAGTGGACCATGCCCAGATATTGAAGTCAAAATGACCCATTCCCCAGGAAACTCAAATGACATTGAGTGAAGGAGCAGAGGACAGGAAGAGTGCTGAATAAGATGCATGCATCAATACTATGTTGCACATACGGACAAAAATGTAcacaaacattttatttttgcaaCTGTACTAATAGCACTGAATCGTTTTGCACATATTGAGGTCATACAAAAAATGCCTTGAATTGAGTAAAAGAGATTCTGCATTTACAACCAATCAAATTATATCACTGTACACGTTTTTAATTATCAGTCACACCTGACCCTACTTGCTCTTTGTAGAGAAATTGGTAGTAGTCAGTCAACATTTTCCCAGTAATAGAGGCTGTGTTGTATTCAAAATAATATGCATTAGATTAATGCTGAAATAAAGAGGGATGCTTATTCAACATGTGTGTCCTTGTCagt

Function

NR:

description
MAM domain-containing protein 2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602354.2 True 2753 mRNA 0.51 14 28796448 28804711

Neighbor

gene id symbol gene type direction distance location
LOC110523554 LOC106566671 coding upstream 15717 28737461 ~ 28780731 (+)
pip5k1ba LOC106566653 coding upstream 63406 28720277 ~ 28733042 (+)
LOC110523549 LOC106567216 coding upstream 313063 28481432 ~ 28483385 (+)
LOC110522905 LOC106563371 coding upstream 320910 28473547 ~ 28475595 (+)
LOC110523547 ccdc152 coding upstream 329314 28464099 ~ 28467134 (+)
smc5 smc5 coding downstream 515 28805226 ~ 28829428 (+)
zfand5b zfand5b coding downstream 25004 28829715 ~ 28837189 (+)
LOC110523559 LOC106566708 coding downstream 71862 28876573 ~ 28880143 (+)
spag8 LOC106566715 coding downstream 121552 28926263 ~ 28931410 (+)
ssna1 ssna1 coding downstream 200056 29004767 ~ 29009110 (+)
G386065 NA non-coding upstream 25881 28756510 ~ 28770567 (+)
G386057 NA non-coding upstream 77426 28718802 ~ 28719022 (+)
G386044 NA non-coding upstream 90936 28705178 ~ 28705512 (+)
G386024 NA non-coding upstream 111434 28684742 ~ 28685014 (+)
G386022 NA non-coding upstream 113241 28682750 ~ 28683207 (+)
G386445 NA non-coding downstream 48169 28852880 ~ 28853151 (+)
G386537 NA non-coding downstream 157106 28961817 ~ 28965648 (+)
G386568 LOC106566731 non-coding downstream 189434 28994145 ~ 28995123 (+)
G386606 NA non-coding downstream 266101 29070812 ~ 29073163 (+)
G385805 NA other upstream 378893 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 891717 27904467 ~ 27904731 (+)
G385053 NA other upstream 1089370 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1113055 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 2132835 26661838 ~ 26663613 (+)
tbx5a LOC106566939 other downstream 937089 29741800 ~ 29763439 (+)
G387516 NA other downstream 1092275 29896986 ~ 29898134 (+)
G388019 NA other downstream 1482240 30286951 ~ 30287824 (+)
G390184 NA other downstream 3155644 31960355 ~ 31960745 (+)

Expression


Co-expression Network