LOC110523670 (LOC106565078)


Basic Information

Item Value
gene id LOC110523670
gene name LOC106565078
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35639728 ~ 35651003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977349.1
ttcaaactgatgtgtgacacatattaatggcAAAATAACATGAAAAACAGGCAACCTCCCCCCAAAATAATTGGCCTAAATGTGGGGCCCCGCCCCATCTGgcctgaatgacgggtcaccacTATGAGTAGCTATGGGTGACTTTTGCTAGGTGGGAAGGAAGGGAGCACGCCACGGCTGACTGAGTGAATCATGCAGCTCTGGCGCTGGCCATGCTGATGGCTTGGGGCAGAGGAGGCATTAGTATTCTGAGTCTGACTATAGACTCCAGAATTAGCATGAGGCTTCATAGTAGCATTGGGCTGCTTATCTGTTCTAGTATCATCATAACCCATTTAATGCTCTCCTTTCCTCCTGTTTCAGATGTTTCCTTCAGAGCATGGAGACTCTTTCAGTAATAACATCAACTGCTGAGCTGAGATAATGAACAGGACATCCAGCCTATCAGGGGACACCCTGATCGCGTGTCACTTCCCCCTGGTGCAGCTCCCCCCCTGGCAGCTTCCTGTGCAGGCTGCTCTGTGCAGCAGCTCTTCCAAGCGGCCTGGTCGACTGTGCTCCAGCTCCGTGGGTCTGACCCGCGCTGCCTCCCTCCCCGAGCAAGGCAACCTCCACAGAGAGCCCTTCCACAACCGCCTTAGACATATCTCCTCCAGCTACTGGAGCCTCAACGAGGACTGGGGCGAGGGGGACGGGGAGGGGGGCAGTGACAGCAGTGGGAAGTGTGACTCTGGATCATCATCAGAGGAGGCGTCACAGATGACAATCTCTCAAAGACATAAACAACACCCTGTAGTTAGAGGTACTTTACGGCTACACAACTCCTTTCTCCCTAATGAAGGGGtggatgaagatgaggaggaagaagatAGTGATGGAGATAACCTGCACAGATACCATGAGGACTCCTCTTTTGTGCTGCAGTTGCATGGAAACTCTAACTGGGCCCTGAGTAATGCTGGGAGGCAGACCTCCAAACCTTCtagccaatcagccagtcagaaCCATGACAACAGGTGTAAAACTGTGTTGAAGGACTGTGGGGAGCAGGAGAGACTGGAGGATGTTGAAGATAATATGCTAAAATGTGGTGATGAGAGCTACTGCTTCAGCTATGGCCAAACAAAATGTTTCCCTGAGTCTTTCTCTGATGGTCTTCTAGAGTACGTCACAGACTCCTCCTGCAACAGCTCAGATGGGGTTCTCGTCAACTTTAGTGCGATCTACAACAAGAGCAACAACCCTGCCACCCCAAACGACCTCAGCATTCCTGCAATGCAGTCATCCCAGCCAGCAGAAGGCACTATCGTCCTAAACCTGCAACCTTTCCCCCAGGAGCCCCAGGGTCCTCAAGCTGCTGGCCCCAGTCAGGAGGGCAGAACAACCTCCTTTCCTCTTGACGGGGGGCCTTCTGTCCCCTGCTGGTCACCACAGGCGCTGGACTCCAACTGTAATGTCTACCTTCCCGACGCCCAcggcctcctgtcctctctggaGGTCTCTGACCTCACTTCCTGTCTCCAGAGCCAGGCCAGGCTGCTGCCCACAGGGACCACCCAGAAGTACTACAAGCTGGTGACCTGTGACTTGTCATCCCAATCAGCCTCGCCCAGCCCAGCCTGGTCCAGCACCACCAGCGTCACCTCAGAGGGCCACTACTTCctcttcagtaaggcccgggGAGAGCAGAGCCAGGAGGAGAAACAGCAGGAAGAAGGCTTAGACAAAGAAGGGAGGAGAGCTACCCCATTGCACCATCCTCGCTGTTTGAGCTGGGACTCCCAGCATGTCACCTCCTTTGCTGAGATTGCCTACTGtaagagacatacagacagctGCCAGAGCTCCAGCCACTCCCACACCTCCCAGGATCTGTGTCCCATTCAAGAGGCAGTTTCCCTGGGCCAGAGTAGCAGCCACTCCCCCCTACTCCTGAGTCCCAACCAAGGCAGTATCACTGTGTCCAACCACCCTTCTGTGTCACCGAACCATGAGACGGAGGAGGAGGgGGCATGTTCATGGGCCACTCCTGTGGTTCGCTACAGTAAGGCTCAGAGGCCCACCTCCCTGCCCATCCAGCCCTTCATCCTGCTTCCCCCAGCGGGTAAACCTCAGAGCCAGCCCCTGGGCTCCCTGCTGGACCAGTACATCAGCCACAAGAACACCAAGCCCAGCTTCAGCTCCCAGCCAGGGTCCAAGTGCATAGGCAAAGGCAACAGACTCCTGACCCACCTGCATCCCTCACCGCTAGGCAGCTATGGAGCCATCCTCCTGGAAGGCCCCTCCAGCTCTGATACCTGCTCCACCTGCACCCCCAGTCCAGAACGCTTCCAGTCCAGACTCAACTGGACACACTCCAGTCCATACAGGCCCCACACTAACCTTGGTCTCACTTCGGCCAGTCCAAAACAAGCACAAACAAGCACCAAACTAACCCAGGCTTATTCATGCCAggaccagctctatgaagacctAGACCAAATCTACCCCAGCCCAGCTCAGGCCCACAGTAGCCCAAACCAGTCTCATTGTAAAGATTCAATCAAACGGAGCCAAGGCATGGCTCAGATCTGCCAAGATCTCATTCGCCTGTCCCCAGAGCAGAAGAGCCTCAACCCAGTCCTCCTGACCCACAGCCCTCACTGCCCCATCTCCCATGTAGCAACCATGTCACCCTCTGACAGTCACATCCATCATCCAGACTTGCTGGTGTCCTTCTCCCCAGACCCACCCTTACTTCCCCATAAGACAATCCCACTATCCTCAGTCCCTATGACTGGGTCTGCAGCCTCTCATCGTAGCCTGACTGCTGCTCTCTCGTCAGTggcccctctgtcctctctgagcGCCCTTCTGCAGCCCCTGGTGTCTGCAGGGCCCAGTGTAAAGCAGCATCAACAACAGCACTGTGACTCCTTCAGCCTGAGTGACAGTAGGCCACCTGTGGAGTTCTGCCTGTCACCTGAAGCCTCCTACGAGTCTCTGTCCATCAGCCACCtgcagaggagagGTCTGCTGAAATCTGTGAGCTTGGCAGTGGATTTGATCATGGCTCATTTTGGCACCAGTCGAGATCCTGTGGAAAAGATCCGGCTAGGGAACAGCTCGAGGAGTCCCACCATTGGTGGTATAGTCCTGGAGCATCTGTGTCCCACCATCCAGAACATTCTGCAGGATGGCCTTAGGGACCACAAACTTGACCTGATCATCGGTCATCGACGCAACCACGCCTGGAATGTGGTGGAGGCCTCCACTcagacagGCCCTACCACCCAGGTGCTACACAGCCTGTTGTCCAAGGTGAGGCAGTGCTCCCTGCTGACCAGCCACTGTATGAGACTACGAGCCTTCATCATGGGCCTGCTCAACTTGAGAGCCTTGGAATTCTGGCTAAATCACCTCTACAACCAAAAAGACATGGTGACAGATCACTACCATCTATGGGGTTTCCTCGCCATGTCGCAGGGGCAGTGTCAGCCTCTGTTCCAGGAGCTCCTTCTCCTGCTGCAGCCTCTTTCCATGTTACCCTTTGACCTCAACCTGCTGCTGGAGCCCCGCCTGCTGCAAAATAGACAGCTCTGCTCTGAGGAACAAGCTCCACCATGCTCCACCTTTCTCATGACCAGTTGGCCCCtactgagaggagacagacagggggcaTATGGTTCTATGGatggtcccagagataacagCAGGCCACCAGGTGACCCACACCAGCTGGTACAGCATCTTCAGGGGTCCACccaggggtcaaaggtcatggGTCATGAGAAGTGGGTGAGGCATTTAGGCAAGTCTAGCAGAAGTCTGTGGTCAGTCACCAGTCCAGGGTGGTGGCAGAGACGGCCTGCCCACGCAGAGGGGGGGGTGGAATATGGACAGATTTACATGGATGTCATCCACACTGAGCCTCAGCAGGGGATGGAGGGGCGAAGAGAAGGTGAGAGTTCacaggagggcaggagggagggaaCTGGGCCGGAGACCCCCAGGATGCCGGCAGACCCCCAGGATGAGAGCCTCTCCCAGGGTGGGCTACGCTGGGCCAAGCTGTTTGGATCAGGAGGGAATCCCCCCACCAGGACACAGAGGGCACCTCAAAATCTCAATGGGACACAGGCCCAGAAAAGGAGACCTTCACAGTGGCTGCAGTTGGACAGGTCTCAGCTGGGCCTATTGGCTCATACAGTGTGGTCAGGGAAACTCCCAGCTCCACAGCCTGACCAGAAACACCAGACATAGACATTGTGCCCCTATGACCACACTCACCCAACCCTCTGCTGAgtggagagggatagggaggagaAGAAAAGATACACCACCAAAAATGTCAACCGCATGATCCTGAGTCAGTGTTATAGTGCACAGTGTTACACACAGACACCTCAGCTAGAACATACTCACACTGGTCAGAAAAGCACAGTAGACCAGTTGATACAACTATCGGAGCATGGGTGATACTTTTTGCTATGTTATTATTAGGcaataacaaccccccccccccccatgtattattatatttacAAGTGCTTCTTTTCATCTGTCATGAATTGGGATTTATGCAATATATTCTCCCTGTGAACCTGTCAATCAAACTGTGTGGTCAGAGAGGCTCCTCCCATGTTAGGGTCTTGCCTTGATCTGAAAGCCTTGTACAACATCCCAGACTCTGCAGAAGAAACCAATTAGTATGTCATGGAGCTGCATGCATACCATACAGTAGCATCCTATTCTCCTAATACTGTCAATCTGATCCTCTACTTTCCAACCCCTACCCCGTGACTATCCTATGTGCGAATGGAATGACAACAAAAAATGCAGAAAGGCAATCTTTACTAGCCATGTTTACTAGTGCCACATATTATGCCAGCCAGCAGCCTTGTGCAGTGGCTTATCTTCCAAAAGGGGGTTGCCTTCACATTCAACTAGACAAACATGAGGTCTGACTCTAGCATGGTTTAAAACAAACATTCAAGGAGTCATTAGGTGCTAATTTAGGCCTACTACTGTGTGTGGTTGTACTATACTACCTACAACAATATCTTATcatactgtttttttttatgagTTTTGTAAATATTTAGGGAAGAGAAGTCTAGATTTGTGGAACTGTTAGGTTCCAAATGGAGTGTGTTGTTTGCACAATATAAAGCTATCATGTTGTGTTTCAGGTGTACACCATTTTGATAGGCCAGTACTACTAAGCTAAAGAGAAAGGCAAAGTCTGGATTTACGTGACATGAATGACTTGGTTATTATAGCCTTTGCAATAAATGTGAAAGTGAGTTTATCATATTTCCTCCCCAACCTAACTGTCCTTCCCCTAAAACCTTAGAAGAAGGGTCTGcgctggggtggcaggtagcctagtggttagagcgttgggccagtaatcgaaaggttcctggtttgaatccccgagctgacaaggtaaaaatgtgtcattctgcccctgaacaaggccactgttcccccggtaggccgtcaatgtaaataagaatttgttcttaactgacttgcctagttgaataaaggttacaCAGAATGCACCCTCTCTGAGTGTAAGTTCCCAGTGACAATCAACCATTCTGAATAAAAAGGTATTGATTTC

Function

NR:

description
iporin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977349.1 True 5611 mRNA 0.52 9 35639728 35651003

Neighbor

gene id symbol gene type direction distance location
atp8b5b LOC106565083 coding upstream 19180 35602601 ~ 35620548 (+)
unc13bb LOC106565090 coding upstream 44110 35546545 ~ 35595618 (+)
LOC118964586 LOC106565090 coding upstream 96933 35482228 ~ 35542795 (+)
stoml2 stml2 coding upstream 159058 35467940 ~ 35480670 (+)
si:dkey-242g16.2 LOC106565196 coding upstream 282484 35354098 ~ 35357244 (+)
si:dkey-106l3.7 LOC106563357 coding downstream 8225 35659228 ~ 35667190 (+)
sppl3 LOC106565002 coding downstream 173210 35824213 ~ 35862626 (+)
kcnn2 LOC106564970 coding downstream 279111 35930114 ~ 35960310 (+)
drg1 drg1 coding downstream 312198 35963201 ~ 35966744 (+)
slc20a1b LOC106564912 coding downstream 355203 36006206 ~ 36019354 (+)
G394731 NA non-coding upstream 7075 35632439 ~ 35632653 (+)
G394728 NA non-coding upstream 8874 35630641 ~ 35630854 (+)
G394722 NA non-coding upstream 15675 35623839 ~ 35624053 (+)
G394472 NA non-coding upstream 40269 35597628 ~ 35599459 (+)
G394475 NA non-coding upstream 43204 35560525 ~ 35596524 (+)
G394746 NA non-coding downstream 18432 35669435 ~ 35669708 (+)
G394747 NA non-coding downstream 18900 35669903 ~ 35670207 (+)
G394753 NA non-coding downstream 31019 35682022 ~ 35682653 (+)
G394757 sglt1 non-coding downstream 35503 35686506 ~ 35692482 (+)
G394767 NA non-coding downstream 49478 35700481 ~ 35700754 (+)
G392776 NA other upstream 1491027 34147474 ~ 34150795 (+)
G391805 NA other upstream 2278387 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2476748 33158826 ~ 33162980 (+)
G390393 NA other upstream 3419195 32220181 ~ 32220533 (+)
G390184 NA other upstream 3678983 31960355 ~ 31960745 (+)
G394882 NA other downstream 254109 35905112 ~ 35905781 (+)
G394910 NA other downstream 315934 35966937 ~ 36004829 (+)
you2 you2 other downstream 382257 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 551898 36202901 ~ 36206616 (+)
G395034 NA other downstream 629297 36280300 ~ 36301290 (+)

Expression


Co-expression Network