LOC110524020 (LOC106613504)


Basic Information

Item Value
gene id LOC110524020
gene name LOC106613504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52351810 ~ 52373401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603305.2
GAGGGGGAAAAGGAACATTCAGAAAAATAGATATTGGTGACTGTAaagtagtttattttttatttttgttggggAGGTGTTAGGTAGTTTAGAGAGCACACTATCTCACTACCACTTCAAAATCAGTAGGCTAGTTATTGGTTTCATaactgtttgtgagtgtgtgcatctgttttataaccaaaatatTTCACACTTGTTGTGATACTCATGGTCATCAGTGACCAATGTGTGGGAAGTTGTTTTGACTTGGGCCTCTATGGAGCTATGGTCTAATGGAGTGTAAAGCAAAAAGCACTTAGGACTTTTTTCTGAAAATCACTTTCCGTGAGTCACATTTCACAGCTGTAAACACATAATTATATTCTCACTTTATCTCCAAGACCTTTCAACGATTCAATCATCGATTTTGCATCTCTCACTGCTGTCTACTTTAAAACTTTGCCCTGAGAATATTTGGATGTTTGCCAGAGCCAATCCTATTTTCTTCCGGGAACTTTAGAGGCATTTTGCATGGTTCTATCAATTATGTATGTTTTCATATACAGGTGTCTCTCGTGAGGTCCGTTACCTAACGTAGGCCTACGACTATTATGACATCATAGCCCTATTTGGATGGGTGTTACTAGAGACGTTGGATTTGTAATTATTATCCAAGGATATGCGTTATTCCAGAGGACGATTCACACAAAATGAGTTCGTTTTTCCAAACTATCTTTTTGTTCAGTGCATTTAAATTGAAGTGTGATCATACTAATTATTTTAGTGATCCATCCATGGCAGAGCTACCATTCGTTAGGttctccaaccctaatctagggCATCTGATTAATTAATTAGCTGGatgataaactgaatcaggttagttaaaAGTGGGGTTGGAGCAAAACCTATAGGAAGGTAGCTATCCAGGAACAGAATTGGAGAGCCCTCACCTATGCCATAAAACAGGGTTGAATTAAATAGCCTAAACTatagaaaacacattttattgCAAATTTAGGCCTAATTAAACTGATACATTTGGCGATGTTCAACTTAAATTCACTGGCACAACGAATAATACCTTAACCGTACACCATAGTGATTGCCTCGTAAATTGACCAAAAGTATATTTTAGGCTTTGTTAGATACAGATTACCAAAATATAGCCTATGTGAACGGCACTGACTGTCTATCTGCCTGCCctgatcctctctctccctcgcctgcTCCTCTTCGCTAGTGTTTGGTCTTCGGTCTGTTGGGTGTAGAATAGCTCAGCCCACTCATTGATTGTCCCTACATTGCAAGACAAGAAATTCCTATAGCCTACATTTTATGATTACCTCATGCACGGTTCCGACTGTCTGCATCTATATCTATCGCTAGCTCGCTCTTTGCTGTGagagttttgtttttgaaatataCAAGGGAAATAGTTTCCTCCGTTGCAAAAAATACTGAATCTTAGGAGTCGAGGAGTAAATTCCGAATCTTGACACCCAGAAATGCGAGTCGGCGGGCAAGGACTCGAGGAATCGATTAGATGAGGTGCCGTCAACTTCGCCTGATGACTTGTGTTTGACAGCGACGCTCTGCTGTGGAAAGGGTGAAGAAAAAAGACTATGGAAATCTTCAAAATGGACTAGTTCCTCCTTCTCTTCTGAAGTGCGTTGGGAATAGCCAAACCTCCTCCAGCCACCATGAACCACTCTAACGAGTCGACCCCACTGTGCTTTTCCATCAACAGTCCCCCCTTCAACTACACCCACACCATTGCTTCCGCCTACTTCTCATCAGTGTTTAGTGCACTGGGCCTCACCTTCAACCTCATCGCCTTCGTGGTCCTCCTGAAGTCCTTCCTACGCACGCAAAGCCGGTCGCGCTCCtccttcctcatcttcctctgcGGCCTGGTGTTTACCGACTTCATGGGCCTCCTGGTCACCGGCTCCATCGTGGTCTCCTTCCACTTCACCCAGTTCAACTGGCGCCTCCTGGACCCGCACTGCCACTTCTGCAACTTCATGGGCATGTCTATGGTCTTCTACGGCCTGTGCCCGCTTCTGCTGGGAGCCACCATGGCCATGGAGCGTTTCGTGGGCATCAATCGGCCGTTCGCCCGCTCGACCAGCATGATGACCAAGTCGCGGGCAGTGTCCATAGTGCTGCTGGTATGGGCAGGGGCGGGGTGCATCTCACTGCTGCCCCTGGTTGGTGTTGGGAGCTACCACATGCAGATACCGGGCTCCTGGTGCTTCTTTAAAATTAGCTCAGAGGCAAGCGACATGGCCTTTTGCCTGCTTTTCTCACTGGTAGGGCTGCTGTCCATCGCCGTGTCCTTCTTGCTCAATACAATAAGCGTGGTGACCCTGGTCAAGGTGTGCTGCAGCCAGGACGCTAGGCAGCGGCGCCGCGACTACGAGGTGGAGATGATGGTGCAGCTCATCTGGATCATGATGATCGCTTCCATCTGCTGGTGCCCCCTGCTGGTGTTTATTACAAAGACTGTGTTTTCGGGGAGCCCACTCCGGATCCACTACCTGCTGCTCTTCATTCGCTTCGCCACCTGGAACCAAATCCTGGACCCCTGGGTGTACATCCTGTTTCGCCGCGCTGTCCTCAAGCGCCTCTACCCCCGCTGGGACTGGTCCCAGGGCTCCATCAGGACCCTGTACCCCTCCTTCGTTGGTACCGTCTGCCGGCTGACCCGTGCCTCCGTGGGCAGTGACCCGCTAGGGGGAGGCGATGGGGGTGTGTCGGTCAAAGAGGAAGGCAAACCCCAGTCGTTTAATGTGAAGGCTCCACCTTCACCGCCTTGACTGGTTCCTGTTGTGCATTGGTGTTCATCTTTGTCGGTGAAGTCGTTATTTCAGAATCAACTTTATTTTACTTGGTGCTGTTGGTGATAGACAACATTTAGAAACAGAATACAGACAACGGAGTTTAAaaatagtttacatacactaccggtcaaaagtttttgaacgtctactcattcaagggttttcctttatttgtacaattttccacattgtagaatagtgaagacatcaacaaacac
>XM_021603306.2
GAGGGGGAAAAGGAACATTCAGAAAAATAGATATTGGTGACTGTAaagtagtttattttttatttttgttggggAGGTGTTAGGTAGTTTAGAGAGCACACTATCTCACTACCACTTCAAAATCAGTAGGCTAGTTATTGGTTTCATaactgtttgtgagtgtgtgcatctgttttataaccaaaatatTTCACACTTGTTGTGATACTCATGGTCATCAGTGACCAATGTGTGGGAAGTTGTTTTGACTTGGGCCTCTATGGAGCTATGGTCTAATGGAGTGTAAAGCAAAAAGCACTTAGGACTTTTTTCTGAAAATCACTTTCCGTGAGTCACATTTCACAGCTGTAAACACATAATTATATTCTCACTTTATCTCCAAGACCTTTCAACGATTCAATCATCGATTTTGCATCTCTCACTGCTGTCTACTTTAAAACTTTGCCCTGAGAATATTTGGATGTTTGCCAGAGCCAATCCTATTTTCTTCCGGGAACTTTAGAGGCATTTTGCATGGTTCTATCAATTATGTATGTTTTCATATACAGGTGTCTCTCGTGAGGTCCGTTACCTAACGTAGGCCTACGACTATTATGACATCATAGCCCTATTTGGATGGGTGTTACTAGAGACGTTGGATTTGTAATTATTATCCAAGGATATGCGTTATTCCAGAGGACGATTCACACAAAATGAGTTCGTTTTTCCAAACTATCTTTTTGTTCAGTGCATTTAAATTGAAGTGTGATCATACTAATTATTTTAGTGATCCATCCATGGCAGAGCTACCATTCGTTAGGttctccaaccctaatctagggCATCTGATTAATTAATTAGCTGGatgataaactgaatcaggttagttaaaAGTGGGGTTGGAGCAAAACCTATAGGAAGGTAGCTATCCAGGAACAGAATTGGAGAGCCCTCACCTATGCCATAAAACAGGGTTGAATTAAATAGCCTAAACTatagaaaacacattttattgCAAATTTAGGCCTAATTAAACTGATACATTTGGCGATGTTCAACTTAAATTCACTGGCACAACGAATAATACCTTAACCGTACACCATAGTGATTGCCTCGTAAATTGACCAAAAGTATATTTTAGGCTTTGTTAGATACAGATTACCAAAATATAGCCTATGTGAACGGCACTGACTGTCTATCTGCCTGCCctgatcctctctctccctcgcctgcTCCTCTTCGCTAGTGTTTGGTCTTCGGTCTGTTGGGTGTAGAATAGCTCAGCCCACTCATTGATTGTCCCTACATTGCAAGACAAGAAATTCCTATAGCCTACATTTTATGATTACCTCATGCACGGTTCCGACTGTCTGCATCTATATCTATCGCTAGCTCGCTCTTTGCTGTGagagttttgtttttgaaatataCAAGGGAAATAGTTTCCTCCGTTGCAAAAAATACTGAATCTTAGGAGTCGAGGAGTAAATTCCGAATCTTGACACCCAGAAATGCGAGTCGGCGGGCAAGGACTCGAGGAATCGATTAGATGAGGTGCCGTCAACTTCGCCTGATGACTTGTGTTTGACAGCGACGCTCTGCTGTGGAAAGGGTGAAGAAAAAAGACTATGGAAATCTTCAAAATGGACTAGTTCCTCCTTCTCTTCTGAAGTGCGTTGGGAATAGCCAAACCTCCTCCAGCCACCATGAACCACTCTAACGAGTCGACCCCACTGTGCTTTTCCATCAACAGTCCCCCCTTCAACTACACCCACACCATTGCTTCCGCCTACTTCTCATCAGTGTTTAGTGCACTGGGCCTCACCTTCAACCTCATCGCCTTCGTGGTCCTCCTGAAGTCCTTCCTACGCACGCAAAGCCGGTCGCGCTCCtccttcctcatcttcctctgcGGCCTGGTGTTTACCGACTTCATGGGCCTCCTGGTCACCGGCTCCATCGTGGTCTCCTTCCACTTCACCCAGTTCAACTGGCGCCTCCTGGACCCGCACTGCCACTTCTGCAACTTCATGGGCATGTCTATGGTCTTCTACGGCCTGTGCCCGCTTCTGCTGGGAGCCACCATGGCCATGGAGCGTTTCGTGGGCATCAATCGGCCGTTCGCCCGCTCGACCAGCATGATGACCAAGTCGCGGGCAGTGTCCATAGTGCTGCTGGTATGGGCAGGGGCGGGGTGCATCTCACTGCTGCCCCTGGTTGGTGTTGGGAGCTACCACATGCAGATACCGGGCTCCTGGTGCTTCTTTAAAATTAGCTCAGAGGCAAGCGACATGGCCTTTTGCCTGCTTTTCTCACTGGTAGGGCTGCTGTCCATCGCCGTGTCCTTCTTGCTCAATACAATAAGCGTGGTGACCCTGGTCAAGGTGTGCTGCAGCCAGGACGCTAGGCAGCGGCGCCGCGACTACGAGGTGGAGATGATGGTGCAGCTCATCTGGATCATGATGATCGCTTCCATCTGCTGGTGCCCCCTGCTGAATATTGCCTCACAGAATGGAAACGGCAGCCAACCGAGACGTCTCCCAGATGGTCGGCGAACAGGGATACCTACTTCGTCAACACCACGATCAGCTGGCGCACCTGGGAACGGAGTTCTTCAACGTCTAGATTCTTCCCCAAGGGAGTCACCCCCAATGAGCGGAGGATCCTCTACCATGAGTTGACCCAGCGAACCAGCACCCCAGCCCATTCAGCAGTCTGCCCTGGTCAGCCATGTCCGTTTGTCCCTTCCAGACAAATATGATGGGACTCCATCCAAATGCTGTGCCTTCCTCCCCCAGTGCCCCCTCTATTTTGCTCATCAAACGGGAGCTCCCAACACTGAGCGCCTACTCCAACCACGACTGGAGGACCAGACTGCTGCGGAGTACGCCCTCACCTTTCATACTGTGGCAGCATCCAGTGGATGGAATATGCTGGTGCTCCGCACCTTATTCACAAAAGGTTTGAGTGAGGAGGTCCAGACGGAGCTGGCATGCCGAGATGACACTCTCTCATTGGACGCACTCATCGCAACGGCCATCTGTCTGGATAACCTCCTTCGGGAGCGTCAGCACTCCCATCGCTTATCTCCCTCCTTTGTTGACTGATCTGAGTCAGAGCCTGAACCAGTGGAGGTAGGGGCTACGCGTATCTCCACGGCTGAGTGATGCGGTCGGAGACAACTAGGGCTATGTCCCTATTGTGTCCAGGAGGGACAGCTTCAACTGTGTCCACTAAGTTCTAAACCGAGAGTCACTGAAGCAGAGGGACGGTCCAATGATCATCCGTCTCATGGGGTAGATCAGGGTGTGAGTATTCATCTTCACTCTCCAACAAACCTTTCTTAGTACCTATTTCAATAGCTGTCTGTCCCTCGTGTTGTTTCCACAGCTTTATTTGACTCCGGAGCCACGGGAATTTTATTGACCAGGCCCTTGCCTCCTCCCTGAACATCATACTGGCTCTCCTCTCCGTTTTCAGTTCAAGCACTGGATAACCAACTACTGGGATCTGGCACAGTCACACACATCACAGCACTACTCACCATCACCGTGGGAGCCCAGCACCAAGAAAGCATCACCACCTTCATTATCCAGGCACCCGTACACAAAGTCGGCCTCCCGTGGCTAAACGCCacgaccccaccatgtcctggcCGAGGATGGAGATTACGGCCTGGGTACCAAGATGCCGGAAGACCTGCCTTTCCTTACCTTGTGGTTCACGTAGGTTGAGAATCCAGTGGTTTTCCTCCAGGCCGACATCCCAGAGGTTTACCAGGATCTCTGGGAGGTTTTCTCCAAGACTcacgccacctgtctccctcctctttgCCCCTGGGACTGAGCCATCGACCTGCTTACAGAATCTGCGCCTCTGCGCAGCCGCGTCTACCCCGTCGGTGGCTGAAACCAAGCCTTTGAAGGAGCACATCCAGGAGGCTCTCCAACAAGGTTTCATCCGCCCAGCCGACTCCCCTGCACTAGCTGGCTTCTTTTTCGCAGTGGTGTAAAGTCCTTAAgtaaaagtactttaaagtactacttaagtccgTTTTTGGGGGTATTTGACAATGTTTACatcactacatttctaaagaaaataatgaactttaaattttccctgacacccaaaagtagtcgttacattttgaatgcttagcaggttAGGAAATGTGGTCTAATTCACATACTTatgaagagaacatccctggtcatccctacagcctctgatctggcggactcactaaacacatgcttcattcgtaaattatatctgagtgttgaagtgtgccctatctgtaaattaaaaaaactAGAA

Function

NR:

description
thromboxane A2 receptor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603305.2 False 3046 mRNA 0.47 3 52351810 52373401
XM_021603306.2 True 4299 mRNA 0.48 3 52356366 52373401

Neighbor

gene id symbol gene type direction distance location
LOC110524019 LOC106613502 coding downstream 65100 52264521 ~ 52286710 (-)
LOC110524016 LOC100380721 coding downstream 151962 52172054 ~ 52199848 (-)
actl6a acl6b coding downstream 205414 52132002 ~ 52146396 (-)
LOC110524012 NA coding downstream 244186 52102248 ~ 52107624 (-)
LOC110522967 LOC106613496 coding downstream 249861 52040408 ~ 52101949 (-)
ptprsa LOC106613507 coding upstream 31326 52404727 ~ 52688046 (-)
kdm4b LOC101448002 coding upstream 872744 53246145 ~ 53333935 (-)
LOC110524026 LOC106613510 coding upstream 960932 53334333 ~ 53376599 (-)
LOC118964771 NA coding upstream 971679 53345080 ~ 53345217 (-)
LOC110522968 LOC106613459 coding upstream 1349989 53723390 ~ 53734904 (-)
G413678 NA non-coding downstream 60031 52227477 ~ 52291779 (-)
G413689 NA non-coding downstream 91784 52259322 ~ 52260026 (-)
G413623 LOC106613497 non-coding downstream 241998 52108758 ~ 52109812 (-)
G413112 NA non-coding downstream 344777 52005480 ~ 52007033 (-)
G413745 NA non-coding upstream 25092 52398493 ~ 52398805 (-)
G413777 NA non-coding upstream 111313 52484714 ~ 52485149 (-)
G413900 NA non-coding upstream 318418 52691819 ~ 52692025 (-)
G413983 NA non-coding upstream 371145 52744546 ~ 52744788 (-)
G413985 NA non-coding upstream 372866 52746267 ~ 52746514 (-)
G412613 NA other downstream 739248 51558378 ~ 51612562 (-)
G412372 NA other downstream 974680 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 1167035 51179758 ~ 51228505 (-)
G411930 NA other downstream 1627733 50723159 ~ 50724077 (-)
G411929 NA other downstream 1628749 50722314 ~ 50723061 (-)
G415256 LOC106613513 other upstream 1244282 53617683 ~ 53618864 (-)
G415420 NA other upstream 1517359 53890760 ~ 53892906 (-)
G415464 nexn other upstream 1630330 54002448 ~ 54005673 (-)
G416110 NA other upstream 1989885 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 2767914 55123617 ~ 55181458 (-)

Expression


Co-expression Network